miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5604 5' -61.4 NC_001806.1 + 25934 0.68 0.501317
Target:  5'- cGCGcGGCGGGCGUggGGGCgGGGCcgcgGGAg -3'
miRNA:   3'- cCGC-CCGUCCGCG--UUCGgCUCGa---CUU- -5'
5604 5' -61.4 NC_001806.1 + 27019 0.68 0.520414
Target:  5'- cGGCGccGGguGGCGgAGGCCGAgGCg--- -3'
miRNA:   3'- -CCGC--CCguCCGCgUUCGGCU-CGacuu -5'
5604 5' -61.4 NC_001806.1 + 29675 0.81 0.073382
Target:  5'- aGGCGGGCGGGCgaggaaaggGCGGGCCGGGgaGGGg -3'
miRNA:   3'- -CCGCCCGUCCG---------CGUUCGGCUCgaCUU- -5'
5604 5' -61.4 NC_001806.1 + 30387 0.66 0.649338
Target:  5'- -cCGGGCGcgugcgacgguGGCGCGcggcucgggggGGCCGGGCgUGGAg -3'
miRNA:   3'- ccGCCCGU-----------CCGCGU-----------UCGGCUCG-ACUU- -5'
5604 5' -61.4 NC_001806.1 + 30515 0.74 0.240425
Target:  5'- cGGCGGuGCguccgaggaagAGGCGCGGGUCGGGCcagGAAa -3'
miRNA:   3'- -CCGCC-CG-----------UCCGCGUUCGGCUCGa--CUU- -5'
5604 5' -61.4 NC_001806.1 + 33648 0.74 0.240425
Target:  5'- gGGCGGGgGGGggguguCGCGGGCCGucuGCUGGc -3'
miRNA:   3'- -CCGCCCgUCC------GCGUUCGGCu--CGACUu -5'
5604 5' -61.4 NC_001806.1 + 34309 0.68 0.509874
Target:  5'- cGGCGGG-GGGCgGCGcGCCGGacggggcGCUGGAg -3'
miRNA:   3'- -CCGCCCgUCCG-CGUuCGGCU-------CGACUU- -5'
5604 5' -61.4 NC_001806.1 + 34395 0.77 0.151
Target:  5'- gGGUGGGC-GGCGguGGCCGGGCcGGg -3'
miRNA:   3'- -CCGCCCGuCCGCguUCGGCUCGaCUu -5'
5604 5' -61.4 NC_001806.1 + 34418 0.67 0.559405
Target:  5'- nGGcCGGGcCGGGC-CGGGCCGGGUgGGc -3'
miRNA:   3'- -CC-GCCC-GUCCGcGUUCGGCUCGaCUu -5'
5604 5' -61.4 NC_001806.1 + 34519 0.71 0.331702
Target:  5'- cGGgGGGUGGgaGCGCGGGCCGGGCc--- -3'
miRNA:   3'- -CCgCCCGUC--CGCGUUCGGCUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 36211 0.67 0.589176
Target:  5'- cGCGGGC-GGC-CAuGCCgcugGAGCUGAu -3'
miRNA:   3'- cCGCCCGuCCGcGUuCGG----CUCGACUu -5'
5604 5' -61.4 NC_001806.1 + 37765 0.66 0.619215
Target:  5'- cGGC-GGCGGGCGCcuuucgcuccgGGGCCgGGGCgcgGGGg -3'
miRNA:   3'- -CCGcCCGUCCGCG-----------UUCGG-CUCGa--CUU- -5'
5604 5' -61.4 NC_001806.1 + 38076 0.68 0.53007
Target:  5'- cGCGGGCAGGCuggGCuuuGGUCGgugggGGUUGGAg -3'
miRNA:   3'- cCGCCCGUCCG---CGu--UCGGC-----UCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 38821 0.66 0.619215
Target:  5'- gGGCgGGGguGGauaCGCuGGCUGGGUUGGu -3'
miRNA:   3'- -CCG-CCCguCC---GCGuUCGGCUCGACUu -5'
5604 5' -61.4 NC_001806.1 + 41829 0.67 0.549571
Target:  5'- cGgGGGCGGGCGuCAGGgccCCGGGCg--- -3'
miRNA:   3'- cCgCCCGUCCGC-GUUC---GGCUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 42061 0.68 0.491883
Target:  5'- uGCGuGGCuAGGCGCGGG--GGGCUGAAa -3'
miRNA:   3'- cCGC-CCG-UCCGCGUUCggCUCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 45295 0.67 0.589176
Target:  5'- cGCGGGCccGCGCGgggAGCCGcccGGCgagGAGg -3'
miRNA:   3'- cCGCCCGucCGCGU---UCGGC---UCGa--CUU- -5'
5604 5' -61.4 NC_001806.1 + 50023 0.71 0.359728
Target:  5'- cGCGGGUcugaccuggacgacAGG-GC-GGCCGAGCUGAGg -3'
miRNA:   3'- cCGCCCG--------------UCCgCGuUCGGCUCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 51118 0.74 0.23422
Target:  5'- uGCGGGCgcacgugucggggAGGCGCGcGaCCGGGCUGGGa -3'
miRNA:   3'- cCGCCCG-------------UCCGCGUuC-GGCUCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 52636 0.67 0.579214
Target:  5'- aGCGGGCGcGGCGCGAcaaCGAGCc--- -3'
miRNA:   3'- cCGCCCGU-CCGCGUUcg-GCUCGacuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.