miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5604 5' -61.4 NC_001806.1 + 51118 0.74 0.23422
Target:  5'- uGCGGGCgcacgugucggggAGGCGCGcGaCCGGGCUGGGa -3'
miRNA:   3'- cCGCCCG-------------UCCGCGUuC-GGCUCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 21962 0.74 0.218504
Target:  5'- cGGcCGGGCAGccccgGCGGGUCGAGCUGGAc -3'
miRNA:   3'- -CC-GCCCGUCcg---CGUUCGGCUCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 117870 0.75 0.198314
Target:  5'- aGCGGGCGaugucGGCGgGGGCCGAGCccgUGAGc -3'
miRNA:   3'- cCGCCCGU-----CCGCgUUCGGCUCG---ACUU- -5'
5604 5' -61.4 NC_001806.1 + 34395 0.77 0.151
Target:  5'- gGGUGGGC-GGCGguGGCCGGGCcGGg -3'
miRNA:   3'- -CCGCCCGuCCGCguUCGGCUCGaCUu -5'
5604 5' -61.4 NC_001806.1 + 29675 0.81 0.073382
Target:  5'- aGGCGGGCGGGCgaggaaaggGCGGGCCGGGgaGGGg -3'
miRNA:   3'- -CCGCCCGUCCG---------CGUUCGGCUCgaCUU- -5'
5604 5' -61.4 NC_001806.1 + 2740 0.72 0.310182
Target:  5'- cGGCGGGCcGGCGCGacacggccacggGGCgCGGGCgGGc -3'
miRNA:   3'- -CCGCCCGuCCGCGU------------UCG-GCUCGaCUu -5'
5604 5' -61.4 NC_001806.1 + 146091 0.71 0.331702
Target:  5'- gGGCGGGCAGGCGCucGCgGAa----- -3'
miRNA:   3'- -CCGCCCGUCCGCGuuCGgCUcgacuu -5'
5604 5' -61.4 NC_001806.1 + 22142 0.69 0.464096
Target:  5'- aGGCGGaGgAGGCGCGAcGCCG-GUUcGAGg -3'
miRNA:   3'- -CCGCC-CgUCCGCGUU-CGGCuCGA-CUU- -5'
5604 5' -61.4 NC_001806.1 + 99648 0.69 0.455016
Target:  5'- uGGCGGGCcuGGCggGCAGGC--AGCUGGGg -3'
miRNA:   3'- -CCGCCCGu-CCG--CGUUCGgcUCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 69561 0.69 0.455016
Target:  5'- aGGCGGGUccaGGGCGCcAGC-GAGCa--- -3'
miRNA:   3'- -CCGCCCG---UCCGCGuUCGgCUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 22184 0.7 0.419694
Target:  5'- cGGCGGccguGUGGGCGC---CCGAGCUGGg -3'
miRNA:   3'- -CCGCC----CGUCCGCGuucGGCUCGACUu -5'
5604 5' -61.4 NC_001806.1 + 92923 0.7 0.419694
Target:  5'- gGGCgGGGCGGGCcuGgAGGCCGGggcccgcgcGCUGAu -3'
miRNA:   3'- -CCG-CCCGUCCG--CgUUCGGCU---------CGACUu -5'
5604 5' -61.4 NC_001806.1 + 147225 0.7 0.419694
Target:  5'- aGGCGGcccccGCGGGgGUcgGGGCCGAGgaGGAa -3'
miRNA:   3'- -CCGCC-----CGUCCgCG--UUCGGCUCgaCUU- -5'
5604 5' -61.4 NC_001806.1 + 2925 0.7 0.402667
Target:  5'- cGCGGGCcgccgccuccGGGCGgcCGGGCCGGGCcgGGAc -3'
miRNA:   3'- cCGCCCG----------UCCGC--GUUCGGCUCGa-CUU- -5'
5604 5' -61.4 NC_001806.1 + 127752 0.7 0.39432
Target:  5'- gGGCGGGCugccGGGUGCGGGCCuguGGCg--- -3'
miRNA:   3'- -CCGCCCG----UCCGCGUUCGGc--UCGacuu -5'
5604 5' -61.4 NC_001806.1 + 74644 0.7 0.374749
Target:  5'- aGCGcugcGGCAGGCGCGGGCCauggaugccgccaAGCUGAc -3'
miRNA:   3'- cCGC----CCGUCCGCGUUCGGc------------UCGACUu -5'
5604 5' -61.4 NC_001806.1 + 2852 0.71 0.36996
Target:  5'- cGCGGGCgcggggagggGGGCGCGGGCgucCGAGCcGGGg -3'
miRNA:   3'- cCGCCCG----------UCCGCGUUCG---GCUCGaCUU- -5'
5604 5' -61.4 NC_001806.1 + 50023 0.71 0.359728
Target:  5'- cGCGGGUcugaccuggacgacAGG-GC-GGCCGAGCUGAGg -3'
miRNA:   3'- cCGCCCG--------------UCCgCGuUCGGCUCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 10394 0.71 0.339116
Target:  5'- gGGCGGGgggAGGCGgGAGCCGGggggucccGCUGGc -3'
miRNA:   3'- -CCGCCCg--UCCGCgUUCGGCU--------CGACUu -5'
5604 5' -61.4 NC_001806.1 + 34519 0.71 0.331702
Target:  5'- cGGgGGGUGGgaGCGCGGGCCGGGCc--- -3'
miRNA:   3'- -CCgCCCGUC--CGCGUUCGGCUCGacuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.