miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5604 5' -61.4 NC_001806.1 + 3347 0.67 0.539791
Target:  5'- cGCGGG-GGGCugGCGGGCCGGGCc--- -3'
miRNA:   3'- cCGCCCgUCCG--CGUUCGGCUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 100310 0.67 0.539791
Target:  5'- cGGCugGGGUugGGGCGCGgcauGGCCggcgacGAGCUGGu -3'
miRNA:   3'- -CCG--CCCG--UCCGCGU----UCGG------CUCGACUu -5'
5604 5' -61.4 NC_001806.1 + 3727 0.67 0.539791
Target:  5'- gGGCGcguaGGCGcGGCGCAGGCUGgucAGCagGAAg -3'
miRNA:   3'- -CCGC----CCGU-CCGCGUUCGGC---UCGa-CUU- -5'
5604 5' -61.4 NC_001806.1 + 41829 0.67 0.549571
Target:  5'- cGgGGGCGGGCGuCAGGgccCCGGGCg--- -3'
miRNA:   3'- cCgCCCGUCCGC-GUUC---GGCUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 132141 0.67 0.549571
Target:  5'- uGGCccuGGCGGcGCGCGuuGCCGAGCa--- -3'
miRNA:   3'- -CCGc--CCGUC-CGCGUu-CGGCUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 2527 0.67 0.553498
Target:  5'- gGGCGGGCccGGCGCAccgcgcggcgaucgaGGCCaGGGCc--- -3'
miRNA:   3'- -CCGCCCGu-CCGCGU---------------UCGG-CUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 10113 0.67 0.559405
Target:  5'- cGCGGcGCAcGGCGCGucGGCCGGGgacagacauuCUGGGa -3'
miRNA:   3'- cCGCC-CGU-CCGCGU--UCGGCUC----------GACUU- -5'
5604 5' -61.4 NC_001806.1 + 34418 0.67 0.559405
Target:  5'- nGGcCGGGcCGGGC-CGGGCCGGGUgGGc -3'
miRNA:   3'- -CC-GCCC-GUCCGcGUUCGGCUCGaCUu -5'
5604 5' -61.4 NC_001806.1 + 148089 0.67 0.569288
Target:  5'- gGGCGccgaGGgGGGCGCuguccGAGCCGcggccGGCUGGGg -3'
miRNA:   3'- -CCGC----CCgUCCGCG-----UUCGGC-----UCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 52636 0.67 0.579214
Target:  5'- aGCGGGCGcGGCGCGAcaaCGAGCc--- -3'
miRNA:   3'- cCGCCCGU-CCGCGUUcg-GCUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 24048 0.67 0.579214
Target:  5'- gGGCGGGCAauuggaccGGCGCccccgacguGUCGGcGCUGGg -3'
miRNA:   3'- -CCGCCCGU--------CCGCGuu-------CGGCU-CGACUu -5'
5604 5' -61.4 NC_001806.1 + 23131 0.67 0.579214
Target:  5'- cGCGGGaCccGCGCcuGCCGAGCUc-- -3'
miRNA:   3'- cCGCCC-GucCGCGuuCGGCUCGAcuu -5'
5604 5' -61.4 NC_001806.1 + 85994 0.67 0.583195
Target:  5'- cGGCaGGCgacggcgucucccggGGGCGCuuGGCCGGGgaGGg -3'
miRNA:   3'- -CCGcCCG---------------UCCGCGu-UCGGCUCgaCUu -5'
5604 5' -61.4 NC_001806.1 + 89281 0.67 0.589176
Target:  5'- gGGCcGGCGGGCGCAAaaaacccggacGCCGccCUGGc -3'
miRNA:   3'- -CCGcCCGUCCGCGUU-----------CGGCucGACUu -5'
5604 5' -61.4 NC_001806.1 + 45295 0.67 0.589176
Target:  5'- cGCGGGCccGCGCGgggAGCCGcccGGCgagGAGg -3'
miRNA:   3'- cCGCCCGucCGCGU---UCGGC---UCGa--CUU- -5'
5604 5' -61.4 NC_001806.1 + 36211 0.67 0.589176
Target:  5'- cGCGGGC-GGC-CAuGCCgcugGAGCUGAu -3'
miRNA:   3'- cCGCCCGuCCGcGUuCGG----CUCGACUu -5'
5604 5' -61.4 NC_001806.1 + 4437 0.67 0.589176
Target:  5'- gGGCGGGgGcGGCGUccGCCcggGGGCUGc- -3'
miRNA:   3'- -CCGCCCgU-CCGCGuuCGG---CUCGACuu -5'
5604 5' -61.4 NC_001806.1 + 3549 0.67 0.589176
Target:  5'- aGGCGGGCGcGGCGgAcAGCCGccccagggcGGCgagGAu -3'
miRNA:   3'- -CCGCCCGU-CCGCgU-UCGGC---------UCGa--CUu -5'
5604 5' -61.4 NC_001806.1 + 83260 0.66 0.609183
Target:  5'- gGGgGGGCGGGCGaCGgaggggguucGGgCGGGCgcgGAGg -3'
miRNA:   3'- -CCgCCCGUCCGC-GU----------UCgGCUCGa--CUU- -5'
5604 5' -61.4 NC_001806.1 + 95076 0.66 0.616204
Target:  5'- cGGCGGGCGGagcauuucgaucGCGCGuucgggagccaccuGGCgGcGCUGGAu -3'
miRNA:   3'- -CCGCCCGUC------------CGCGU--------------UCGgCuCGACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.