Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 92923 | 0.7 | 0.419694 |
Target: 5'- gGGCgGGGCGGGCcuGgAGGCCGGggcccgcgcGCUGAu -3' miRNA: 3'- -CCG-CCCGUCCG--CgUUCGGCU---------CGACUu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 22184 | 0.7 | 0.419694 |
Target: 5'- cGGCGGccguGUGGGCGC---CCGAGCUGGg -3' miRNA: 3'- -CCGCC----CGUCCGCGuucGGCUCGACUu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 147225 | 0.7 | 0.419694 |
Target: 5'- aGGCGGcccccGCGGGgGUcgGGGCCGAGgaGGAa -3' miRNA: 3'- -CCGCC-----CGUCCgCG--UUCGGCUCgaCUU- -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 2925 | 0.7 | 0.402667 |
Target: 5'- cGCGGGCcgccgccuccGGGCGgcCGGGCCGGGCcgGGAc -3' miRNA: 3'- cCGCCCG----------UCCGC--GUUCGGCUCGa-CUU- -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 127752 | 0.7 | 0.39432 |
Target: 5'- gGGCGGGCugccGGGUGCGGGCCuguGGCg--- -3' miRNA: 3'- -CCGCCCG----UCCGCGUUCGGc--UCGacuu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 74644 | 0.7 | 0.374749 |
Target: 5'- aGCGcugcGGCAGGCGCGGGCCauggaugccgccaAGCUGAc -3' miRNA: 3'- cCGC----CCGUCCGCGUUCGGc------------UCGACUu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 2852 | 0.71 | 0.36996 |
Target: 5'- cGCGGGCgcggggagggGGGCGCGGGCgucCGAGCcGGGg -3' miRNA: 3'- cCGCCCG----------UCCGCGUUCG---GCUCGaCUU- -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 50023 | 0.71 | 0.359728 |
Target: 5'- cGCGGGUcugaccuggacgacAGG-GC-GGCCGAGCUGAGg -3' miRNA: 3'- cCGCCCG--------------UCCgCGuUCGGCUCGACUU- -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 10394 | 0.71 | 0.339116 |
Target: 5'- gGGCGGGgggAGGCGgGAGCCGGggggucccGCUGGc -3' miRNA: 3'- -CCGCCCg--UCCGCgUUCGGCU--------CGACUu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 34519 | 0.71 | 0.331702 |
Target: 5'- cGGgGGGUGGgaGCGCGGGCCGGGCc--- -3' miRNA: 3'- -CCgCCCGUC--CGCGUUCGGCUCGacuu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 146091 | 0.71 | 0.331702 |
Target: 5'- gGGCGGGCAGGCGCucGCgGAa----- -3' miRNA: 3'- -CCGCCCGUCCGCGuuCGgCUcgacuu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 94169 | 0.72 | 0.310182 |
Target: 5'- uGCGGGCGcugcGGCGUcgucugAGGCCGGGcCUGGAg -3' miRNA: 3'- cCGCCCGU----CCGCG------UUCGGCUC-GACUU- -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 2740 | 0.72 | 0.310182 |
Target: 5'- cGGCGGGCcGGCGCGacacggccacggGGCgCGGGCgGGc -3' miRNA: 3'- -CCGCCCGuCCGCGU------------UCG-GCUCGaCUu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 122021 | 0.73 | 0.276709 |
Target: 5'- gGGUGGGUGGGUGUggGUCGGGUcGAc -3' miRNA: 3'- -CCGCCCGUCCGCGuuCGGCUCGaCUu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 135110 | 0.73 | 0.264151 |
Target: 5'- aGGgGGGCGGGgGCAGcGCUGcguGCUGGAc -3' miRNA: 3'- -CCgCCCGUCCgCGUU-CGGCu--CGACUU- -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 2807 | 0.73 | 0.264151 |
Target: 5'- gGGCuGGGCGGGgGCGGGCuCGGGCcccgGGGg -3' miRNA: 3'- -CCG-CCCGUCCgCGUUCG-GCUCGa---CUU- -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 2665 | 0.73 | 0.258046 |
Target: 5'- cGGCGGccGCGGGCGCc-GCCGuguGGCUGGg -3' miRNA: 3'- -CCGCC--CGUCCGCGuuCGGC---UCGACUu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 128267 | 0.73 | 0.258046 |
Target: 5'- aGGCGuuugucaGCAcGGCGCGAGCCGGGCcGAc -3' miRNA: 3'- -CCGCc------CGU-CCGCGUUCGGCUCGaCUu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 30515 | 0.74 | 0.240425 |
Target: 5'- cGGCGGuGCguccgaggaagAGGCGCGGGUCGGGCcagGAAa -3' miRNA: 3'- -CCGCC-CG-----------UCCGCGUUCGGCUCGa--CUU- -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 33648 | 0.74 | 0.240425 |
Target: 5'- gGGCGGGgGGGggguguCGCGGGCCGucuGCUGGc -3' miRNA: 3'- -CCGCCCgUCC------GCGUUCGGCu--CGACUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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