miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5604 5' -61.4 NC_001806.1 + 2527 0.67 0.553498
Target:  5'- gGGCGGGCccGGCGCAccgcgcggcgaucgaGGCCaGGGCc--- -3'
miRNA:   3'- -CCGCCCGu-CCGCGU---------------UCGG-CUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 132141 0.67 0.549571
Target:  5'- uGGCccuGGCGGcGCGCGuuGCCGAGCa--- -3'
miRNA:   3'- -CCGc--CCGUC-CGCGUu-CGGCUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 41829 0.67 0.549571
Target:  5'- cGgGGGCGGGCGuCAGGgccCCGGGCg--- -3'
miRNA:   3'- cCgCCCGUCCGC-GUUC---GGCUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 100310 0.67 0.539791
Target:  5'- cGGCugGGGUugGGGCGCGgcauGGCCggcgacGAGCUGGu -3'
miRNA:   3'- -CCG--CCCG--UCCGCGU----UCGG------CUCGACUu -5'
5604 5' -61.4 NC_001806.1 + 3347 0.67 0.539791
Target:  5'- cGCGGG-GGGCugGCGGGCCGGGCc--- -3'
miRNA:   3'- cCGCCCgUCCG--CGUUCGGCUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 3727 0.67 0.539791
Target:  5'- gGGCGcguaGGCGcGGCGCAGGCUGgucAGCagGAAg -3'
miRNA:   3'- -CCGC----CCGU-CCGCGUUCGGC---UCGa-CUU- -5'
5604 5' -61.4 NC_001806.1 + 100387 0.68 0.53007
Target:  5'- cGcCGGGCGGcGCGgGGGCCGGGgUGc- -3'
miRNA:   3'- cC-GCCCGUC-CGCgUUCGGCUCgACuu -5'
5604 5' -61.4 NC_001806.1 + 38076 0.68 0.53007
Target:  5'- cGCGGGCAGGCuggGCuuuGGUCGgugggGGUUGGAg -3'
miRNA:   3'- cCGCCCGUCCG---CGu--UCGGC-----UCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 27019 0.68 0.520414
Target:  5'- cGGCGccGGguGGCGgAGGCCGAgGCg--- -3'
miRNA:   3'- -CCGC--CCguCCGCgUUCGGCU-CGacuu -5'
5604 5' -61.4 NC_001806.1 + 151307 0.68 0.510828
Target:  5'- cGGUGGGCcgggccucuGGCGCcGGCuCGGGCgGGGg -3'
miRNA:   3'- -CCGCCCGu--------CCGCGuUCG-GCUCGaCUU- -5'
5604 5' -61.4 NC_001806.1 + 34309 0.68 0.509874
Target:  5'- cGGCGGG-GGGCgGCGcGCCGGacggggcGCUGGAg -3'
miRNA:   3'- -CCGCCCgUCCG-CGUuCGGCU-------CGACUU- -5'
5604 5' -61.4 NC_001806.1 + 25934 0.68 0.501317
Target:  5'- cGCGcGGCGGGCGUggGGGCgGGGCcgcgGGAg -3'
miRNA:   3'- cCGC-CCGUCCGCG--UUCGgCUCGa---CUU- -5'
5604 5' -61.4 NC_001806.1 + 101404 0.68 0.501317
Target:  5'- cGGgGGGCGGGCGgaaAGGCgaGAGC-GAAu -3'
miRNA:   3'- -CCgCCCGUCCGCg--UUCGg-CUCGaCUU- -5'
5604 5' -61.4 NC_001806.1 + 100499 0.68 0.491883
Target:  5'- cGGCGcGGCAGcGauCGAGCCGGGCg--- -3'
miRNA:   3'- -CCGC-CCGUC-CgcGUUCGGCUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 42061 0.68 0.491883
Target:  5'- uGCGuGGCuAGGCGCGGG--GGGCUGAAa -3'
miRNA:   3'- cCGC-CCG-UCCGCGUUCggCUCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 71530 0.68 0.482533
Target:  5'- uGCGGGCGGGCGgGGGggGGGgUGGAa -3'
miRNA:   3'- cCGCCCGUCCGCgUUCggCUCgACUU- -5'
5604 5' -61.4 NC_001806.1 + 151460 0.69 0.464096
Target:  5'- gGGCGGccGCGGGCGCGcuccugaccgcgGGuuCCGAGUUGGg -3'
miRNA:   3'- -CCGCC--CGUCCGCGU------------UC--GGCUCGACUu -5'
5604 5' -61.4 NC_001806.1 + 22142 0.69 0.464096
Target:  5'- aGGCGGaGgAGGCGCGAcGCCG-GUUcGAGg -3'
miRNA:   3'- -CCGCC-CgUCCGCGUU-CGGCuCGA-CUU- -5'
5604 5' -61.4 NC_001806.1 + 99648 0.69 0.455016
Target:  5'- uGGCGGGCcuGGCggGCAGGC--AGCUGGGg -3'
miRNA:   3'- -CCGCCCGu-CCG--CGUUCGgcUCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 69561 0.69 0.455016
Target:  5'- aGGCGGGUccaGGGCGCcAGC-GAGCa--- -3'
miRNA:   3'- -CCGCCCG---UCCGCGuUCGgCUCGacuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.