miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5605 3' -56.9 NC_001806.1 + 112463 1.12 0.001413
Target:  5'- cCGCCCCGAUCAAACAGCGCCUCCUGCa -3'
miRNA:   3'- -GCGGGGCUAGUUUGUCGCGGAGGACG- -5'
5605 3' -56.9 NC_001806.1 + 148142 0.79 0.224967
Target:  5'- aCGCCCCGcccGUCAcggggggcgcGGCGGCGCCU-CUGCg -3'
miRNA:   3'- -GCGGGGC---UAGU----------UUGUCGCGGAgGACG- -5'
5605 3' -56.9 NC_001806.1 + 116145 0.79 0.236107
Target:  5'- gCGCCCCGAUgcGGCGGCGCUgcagCgCUGCg -3'
miRNA:   3'- -GCGGGGCUAguUUGUCGCGGa---G-GACG- -5'
5605 3' -56.9 NC_001806.1 + 127214 0.77 0.320039
Target:  5'- gGCCCCGGggAGACAGCGCCUgCg-- -3'
miRNA:   3'- gCGGGGCUagUUUGUCGCGGAgGacg -5'
5605 3' -56.9 NC_001806.1 + 117822 0.76 0.357804
Target:  5'- aCGCCCCGGgau-GCAGgGCCaggaCCUGCg -3'
miRNA:   3'- -GCGGGGCUaguuUGUCgCGGa---GGACG- -5'
5605 3' -56.9 NC_001806.1 + 30237 0.75 0.40709
Target:  5'- gGCCCCGugcgugCGAGCGcCGCCUCCgggGCc -3'
miRNA:   3'- gCGGGGCua----GUUUGUcGCGGAGGa--CG- -5'
5605 3' -56.9 NC_001806.1 + 42616 0.75 0.413112
Target:  5'- gCGCCCUGAUCAuACuGCGCCgcggcggcgucgcgUCCggUGCg -3'
miRNA:   3'- -GCGGGGCUAGUuUGuCGCGG--------------AGG--ACG- -5'
5605 3' -56.9 NC_001806.1 + 67146 0.74 0.424439
Target:  5'- uCGCCCCGAccccaGGGCGGuCGCCUCCa-- -3'
miRNA:   3'- -GCGGGGCUag---UUUGUC-GCGGAGGacg -5'
5605 3' -56.9 NC_001806.1 + 103031 0.74 0.442222
Target:  5'- cCGCCgCCG-UCuc-CAGCGCCUCCaggGCg -3'
miRNA:   3'- -GCGG-GGCuAGuuuGUCGCGGAGGa--CG- -5'
5605 3' -56.9 NC_001806.1 + 135010 0.74 0.460419
Target:  5'- cCGCCCUGGUCcGGC-GCGCCUCgC-GCa -3'
miRNA:   3'- -GCGGGGCUAGuUUGuCGCGGAG-GaCG- -5'
5605 3' -56.9 NC_001806.1 + 29854 0.74 0.460419
Target:  5'- gGCCgCGGcUCGGACAGCGCCcCCcucgGCg -3'
miRNA:   3'- gCGGgGCU-AGUUUGUCGCGGaGGa---CG- -5'
5605 3' -56.9 NC_001806.1 + 132747 0.73 0.469665
Target:  5'- gGCCUCGGcggCAGcCGGaUGCCUCCUGCc -3'
miRNA:   3'- gCGGGGCUa--GUUuGUC-GCGGAGGACG- -5'
5605 3' -56.9 NC_001806.1 + 4751 0.73 0.488435
Target:  5'- gGgCCCGGUCGccGGCGGCGUCggCUGCg -3'
miRNA:   3'- gCgGGGCUAGU--UUGUCGCGGagGACG- -5'
5605 3' -56.9 NC_001806.1 + 63793 0.73 0.488435
Target:  5'- aCGCgCCGGUCGGACGcGCGCuCUCUuuguugUGCg -3'
miRNA:   3'- -GCGgGGCUAGUUUGU-CGCG-GAGG------ACG- -5'
5605 3' -56.9 NC_001806.1 + 39181 0.73 0.497951
Target:  5'- uCGCCCCGG---GGCGGCGgCCUugUCUGCg -3'
miRNA:   3'- -GCGGGGCUaguUUGUCGC-GGA--GGACG- -5'
5605 3' -56.9 NC_001806.1 + 44735 0.72 0.536792
Target:  5'- gGCCCCGGUUggaggGGGgGGCGCCagUUGCg -3'
miRNA:   3'- gCGGGGCUAG-----UUUgUCGCGGagGACG- -5'
5605 3' -56.9 NC_001806.1 + 21097 0.71 0.584685
Target:  5'- uCGCCCCGcaucggcgauggcGUCGgagaacaAGCAGCGCC-CCgGCu -3'
miRNA:   3'- -GCGGGGC-------------UAGU-------UUGUCGCGGaGGaCG- -5'
5605 3' -56.9 NC_001806.1 + 148867 0.71 0.596806
Target:  5'- aGCCCCGucUCGAACAGUuccGUgUCCgUGCu -3'
miRNA:   3'- gCGGGGCu-AGUUUGUCG---CGgAGG-ACG- -5'
5605 3' -56.9 NC_001806.1 + 106959 0.71 0.606937
Target:  5'- cCGCCCacg-CAAACGGCGCggUCUGCc -3'
miRNA:   3'- -GCGGGgcuaGUUUGUCGCGgaGGACG- -5'
5605 3' -56.9 NC_001806.1 + 68789 0.71 0.617086
Target:  5'- cCGCCCCGuUCGugcAAgAGgGCCUCCgGUu -3'
miRNA:   3'- -GCGGGGCuAGU---UUgUCgCGGAGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.