miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5605 3' -56.9 NC_001806.1 + 1628 0.68 0.77451
Target:  5'- gGCCCCagcgcGcgCAGGCGGCGugcgagugggccuCCUCCUcGCa -3'
miRNA:   3'- gCGGGG-----CuaGUUUGUCGC-------------GGAGGA-CG- -5'
5605 3' -56.9 NC_001806.1 + 1952 0.67 0.820012
Target:  5'- gCGCCgCCGGcCAGcgcACGGCGCa--CUGCa -3'
miRNA:   3'- -GCGG-GGCUaGUU---UGUCGCGgagGACG- -5'
5605 3' -56.9 NC_001806.1 + 2079 0.66 0.867884
Target:  5'- aGCCgCCGGUCGc-CGGCGCUggCgaGCa -3'
miRNA:   3'- gCGG-GGCUAGUuuGUCGCGGa-GgaCG- -5'
5605 3' -56.9 NC_001806.1 + 3151 0.66 0.851916
Target:  5'- gGCCCCGGcgaccaggcUCAcggcgcgcacGGCGGCcacggcgGCCUCgCUGCc -3'
miRNA:   3'- gCGGGGCU---------AGU----------UUGUCG-------CGGAG-GACG- -5'
5605 3' -56.9 NC_001806.1 + 3398 0.69 0.737453
Target:  5'- uCGCCgUCGAagcccUCGGcCAGCGCCUCCa-- -3'
miRNA:   3'- -GCGG-GGCU-----AGUUuGUCGCGGAGGacg -5'
5605 3' -56.9 NC_001806.1 + 3568 0.69 0.727709
Target:  5'- cCGCCCCagggcggcgagGAUCcccGCGGCGCCguacCCgGCg -3'
miRNA:   3'- -GCGGGG-----------CUAGuu-UGUCGCGGa---GGaCG- -5'
5605 3' -56.9 NC_001806.1 + 4083 0.7 0.64757
Target:  5'- gGCgCCCGAggccUCGAACcggcgucGCGCCUCCUccGCc -3'
miRNA:   3'- gCG-GGGCU----AGUUUGu------CGCGGAGGA--CG- -5'
5605 3' -56.9 NC_001806.1 + 4176 0.71 0.627246
Target:  5'- cCGCCCCGGgggCGGGggccCGGCGCCgggCCacgGCu -3'
miRNA:   3'- -GCGGGGCUa--GUUU----GUCGCGGa--GGa--CG- -5'
5605 3' -56.9 NC_001806.1 + 4751 0.73 0.488435
Target:  5'- gGgCCCGGUCGccGGCGGCGUCggCUGCg -3'
miRNA:   3'- gCgGGGCUAGU--UUGUCGCGGagGACG- -5'
5605 3' -56.9 NC_001806.1 + 6073 0.66 0.852696
Target:  5'- gGCCCCGGgggcgggccCGGGCGGCGgggggcgggucUCUCCgGCg -3'
miRNA:   3'- gCGGGGCUa--------GUUUGUCGC-----------GGAGGaCG- -5'
5605 3' -56.9 NC_001806.1 + 6142 0.67 0.836721
Target:  5'- aCGCCCg---CAGACGGCGCCggCCa-- -3'
miRNA:   3'- -GCGGGgcuaGUUUGUCGCGGa-GGacg -5'
5605 3' -56.9 NC_001806.1 + 10630 0.69 0.698023
Target:  5'- aGaCUCCGGUUAAccacgGCcGCGCgCUCCUGCc -3'
miRNA:   3'- gC-GGGGCUAGUU-----UGuCGCG-GAGGACG- -5'
5605 3' -56.9 NC_001806.1 + 17369 0.66 0.849563
Target:  5'- uGCCCCGGacuuccgucgacgCAAGCccGGCccuguggaGCUUCCUGCu -3'
miRNA:   3'- gCGGGGCUa------------GUUUG--UCG--------CGGAGGACG- -5'
5605 3' -56.9 NC_001806.1 + 19670 0.7 0.657718
Target:  5'- uCGCCgCCGGUCGccucGACGaggacGUuCCUCCUGCg -3'
miRNA:   3'- -GCGG-GGCUAGU----UUGU-----CGcGGAGGACG- -5'
5605 3' -56.9 NC_001806.1 + 20085 0.69 0.727709
Target:  5'- cCGCuCCCGucguUCGuggcCGGCGCCgUCUGCg -3'
miRNA:   3'- -GCG-GGGCu---AGUuu--GUCGCGGaGGACG- -5'
5605 3' -56.9 NC_001806.1 + 20800 0.68 0.766108
Target:  5'- aCGCCCCGAUCGuccACacggAGCGCgg-CUGCc -3'
miRNA:   3'- -GCGGGGCUAGUu--UG----UCGCGgagGACG- -5'
5605 3' -56.9 NC_001806.1 + 21097 0.71 0.584685
Target:  5'- uCGCCCCGcaucggcgauggcGUCGgagaacaAGCAGCGCC-CCgGCu -3'
miRNA:   3'- -GCGGGGC-------------UAGU-------UUGUCGCGGaGGaCG- -5'
5605 3' -56.9 NC_001806.1 + 21861 0.69 0.706991
Target:  5'- aGCCCCGggC-GGCGGCgaggacccccgcgGCCUCCgcggGCc -3'
miRNA:   3'- gCGGGGCuaGuUUGUCG-------------CGGAGGa---CG- -5'
5605 3' -56.9 NC_001806.1 + 21971 0.71 0.63741
Target:  5'- aGCCCCGGcgggUCGAGCuggacgccgacGCGaCCUCCgGCg -3'
miRNA:   3'- gCGGGGCU----AGUUUGu----------CGC-GGAGGaCG- -5'
5605 3' -56.9 NC_001806.1 + 22178 0.67 0.828455
Target:  5'- gCGCCCCGG-CGgccguGugGGCGCC-CgaGCu -3'
miRNA:   3'- -GCGGGGCUaGU-----UugUCGCGGaGgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.