miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5605 5' -55.3 NC_001806.1 + 112500 1.06 0.005113
Target:  5'- gAAAGUGGAGGACACCGAAGCCGACGUg -3'
miRNA:   3'- -UUUCACCUCCUGUGGCUUCGGCUGCA- -5'
5605 5' -55.3 NC_001806.1 + 21309 0.73 0.566553
Target:  5'- ----cGGcGGGCACCGAcGCCGGCGa -3'
miRNA:   3'- uuucaCCuCCUGUGGCUuCGGCUGCa -5'
5605 5' -55.3 NC_001806.1 + 4993 0.72 0.60765
Target:  5'- --cGUGGGGGugGUCGggGUCGugGUc -3'
miRNA:   3'- uuuCACCUCCugUGGCuuCGGCugCA- -5'
5605 5' -55.3 NC_001806.1 + 91275 0.72 0.61799
Target:  5'- cGAGGUGGAcGACGCCGGc-CCGGCGg -3'
miRNA:   3'- -UUUCACCUcCUGUGGCUucGGCUGCa -5'
5605 5' -55.3 NC_001806.1 + 17602 0.72 0.62834
Target:  5'- ---uUGGAGaGCACCGAGGUCGugGa -3'
miRNA:   3'- uuucACCUCcUGUGGCUUCGGCugCa -5'
5605 5' -55.3 NC_001806.1 + 4587 0.71 0.649042
Target:  5'- cGAGGacGAGGAC-CCGGAGuCCGACGa -3'
miRNA:   3'- -UUUCacCUCCUGuGGCUUC-GGCUGCa -5'
5605 5' -55.3 NC_001806.1 + 37922 0.71 0.659376
Target:  5'- ---aUGG-GGGCGCCGggGCCGucCGUc -3'
miRNA:   3'- uuucACCuCCUGUGGCuuCGGCu-GCA- -5'
5605 5' -55.3 NC_001806.1 + 14385 0.71 0.679969
Target:  5'- uGGGGUGaGGGGACACUGggGCguGCGUu -3'
miRNA:   3'- -UUUCAC-CUCCUGUGGCuuCGgcUGCA- -5'
5605 5' -55.3 NC_001806.1 + 55708 0.71 0.69021
Target:  5'- --uGUGGGGGugACCuccGGGCUGGCGg -3'
miRNA:   3'- uuuCACCUCCugUGGc--UUCGGCUGCa -5'
5605 5' -55.3 NC_001806.1 + 98619 0.71 0.7004
Target:  5'- cAAGGUGGugauGGGCAUCGuGGgCGGCGUg -3'
miRNA:   3'- -UUUCACCu---CCUGUGGCuUCgGCUGCA- -5'
5605 5' -55.3 NC_001806.1 + 6547 0.7 0.720597
Target:  5'- cGGAGgagGGGGGACGCgGggGCgGAgGa -3'
miRNA:   3'- -UUUCa--CCUCCUGUGgCuuCGgCUgCa -5'
5605 5' -55.3 NC_001806.1 + 6503 0.7 0.720597
Target:  5'- cGGAGgagGGGGGACGCgGggGCgGAgGa -3'
miRNA:   3'- -UUUCa--CCUCCUGUGgCuuCGgCUgCa -5'
5605 5' -55.3 NC_001806.1 + 6459 0.7 0.720597
Target:  5'- cGGAGgagGGGGGACGCgGggGCgGAgGa -3'
miRNA:   3'- -UUUCa--CCUCCUGUGgCuuCGgCUgCa -5'
5605 5' -55.3 NC_001806.1 + 99625 0.7 0.730584
Target:  5'- uGGGUGGaAGGACAUgGggGCgGugGc -3'
miRNA:   3'- uUUCACC-UCCUGUGgCuuCGgCugCa -5'
5605 5' -55.3 NC_001806.1 + 113270 0.7 0.730584
Target:  5'- --uGUGGGGGugGCCGAcguggAGCUGcCGg -3'
miRNA:   3'- uuuCACCUCCugUGGCU-----UCGGCuGCa -5'
5605 5' -55.3 NC_001806.1 + 10391 0.7 0.740483
Target:  5'- gGGGGgcgGGGGGAgGCgGGAGCCGGgGg -3'
miRNA:   3'- -UUUCa--CCUCCUgUGgCUUCGGCUgCa -5'
5605 5' -55.3 NC_001806.1 + 19111 0.69 0.759982
Target:  5'- cGGGGUGG-GGGC-CCGggGCUG-CGUu -3'
miRNA:   3'- -UUUCACCuCCUGuGGCuuCGGCuGCA- -5'
5605 5' -55.3 NC_001806.1 + 41226 0.69 0.788338
Target:  5'- uAAAGUGGcccAGGGCcUCGugGAGCCGGCGa -3'
miRNA:   3'- -UUUCACC---UCCUGuGGC--UUCGGCUGCa -5'
5605 5' -55.3 NC_001806.1 + 102344 0.68 0.8154
Target:  5'- ----cGGGGGACGucccCCGggGCCGcCGg -3'
miRNA:   3'- uuucaCCUCCUGU----GGCuuCGGCuGCa -5'
5605 5' -55.3 NC_001806.1 + 38578 0.68 0.832605
Target:  5'- -cGG-GGAGaGGCACCGAAGCgUGAcCGUg -3'
miRNA:   3'- uuUCaCCUC-CUGUGGCUUCG-GCU-GCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.