miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5605 5' -55.3 NC_001806.1 + 4420 0.66 0.912489
Target:  5'- gAGAGgGGGGGugGCCcgggcGggGgCGGCGUc -3'
miRNA:   3'- -UUUCaCCUCCugUGG-----CuuCgGCUGCA- -5'
5605 5' -55.3 NC_001806.1 + 4587 0.71 0.649042
Target:  5'- cGAGGacGAGGAC-CCGGAGuCCGACGa -3'
miRNA:   3'- -UUUCacCUCCUGuGGCUUC-GGCUGCa -5'
5605 5' -55.3 NC_001806.1 + 4993 0.72 0.60765
Target:  5'- --cGUGGGGGugGUCGggGUCGugGUc -3'
miRNA:   3'- uuuCACCUCCugUGGCuuCGGCugCA- -5'
5605 5' -55.3 NC_001806.1 + 6418 0.67 0.879513
Target:  5'- gGAGG-GGGGGACGCgGggGUgGAgGa -3'
miRNA:   3'- -UUUCaCCUCCUGUGgCuuCGgCUgCa -5'
5605 5' -55.3 NC_001806.1 + 6459 0.7 0.720597
Target:  5'- cGGAGgagGGGGGACGCgGggGCgGAgGa -3'
miRNA:   3'- -UUUCa--CCUCCUGUGgCuuCGgCUgCa -5'
5605 5' -55.3 NC_001806.1 + 6503 0.7 0.720597
Target:  5'- cGGAGgagGGGGGACGCgGggGCgGAgGa -3'
miRNA:   3'- -UUUCa--CCUCCUGUGgCuuCGgCUgCa -5'
5605 5' -55.3 NC_001806.1 + 6547 0.7 0.720597
Target:  5'- cGGAGgagGGGGGACGCgGggGCgGAgGa -3'
miRNA:   3'- -UUUCa--CCUCCUGUGgCuuCGgCUgCa -5'
5605 5' -55.3 NC_001806.1 + 10391 0.7 0.740483
Target:  5'- gGGGGgcgGGGGGAgGCgGGAGCCGGgGg -3'
miRNA:   3'- -UUUCa--CCUCCUgUGgCUUCGGCUgCa -5'
5605 5' -55.3 NC_001806.1 + 14385 0.71 0.679969
Target:  5'- uGGGGUGaGGGGACACUGggGCguGCGUu -3'
miRNA:   3'- -UUUCAC-CUCCUGUGGCuuCGgcUGCA- -5'
5605 5' -55.3 NC_001806.1 + 17602 0.72 0.62834
Target:  5'- ---uUGGAGaGCACCGAGGUCGugGa -3'
miRNA:   3'- uuucACCUCcUGUGGCUUCGGCugCa -5'
5605 5' -55.3 NC_001806.1 + 19111 0.69 0.759982
Target:  5'- cGGGGUGG-GGGC-CCGggGCUG-CGUu -3'
miRNA:   3'- -UUUCACCuCCUGuGGCuuCGGCuGCA- -5'
5605 5' -55.3 NC_001806.1 + 21309 0.73 0.566553
Target:  5'- ----cGGcGGGCACCGAcGCCGGCGa -3'
miRNA:   3'- uuucaCCuCCUGUGGCUuCGGCUGCa -5'
5605 5' -55.3 NC_001806.1 + 22128 0.68 0.832605
Target:  5'- ---cUGGGGGGCGcCCGAGGCgGAgGa -3'
miRNA:   3'- uuucACCUCCUGU-GGCUUCGgCUgCa -5'
5605 5' -55.3 NC_001806.1 + 23051 0.66 0.906368
Target:  5'- --cGUGGccGGcGGCAgCGAGGCCGcCGUg -3'
miRNA:   3'- uuuCACC--UC-CUGUgGCUUCGGCuGCA- -5'
5605 5' -55.3 NC_001806.1 + 26833 0.67 0.886576
Target:  5'- cGGG-GaGGGGGCGCCGGAGCCccccGCGa -3'
miRNA:   3'- uUUCaC-CUCCUGUGGCUUCGGc---UGCa -5'
5605 5' -55.3 NC_001806.1 + 27025 0.67 0.856994
Target:  5'- cGGGUGGcGGAgGCCGAGGCgGucauCGg -3'
miRNA:   3'- uUUCACCuCCUgUGGCUUCGgCu---GCa -5'
5605 5' -55.3 NC_001806.1 + 29023 0.67 0.886576
Target:  5'- gGGGGgcgGGGGGACGCCGAccaccauGaCGACGa -3'
miRNA:   3'- -UUUCa--CCUCCUGUGGCUu------CgGCUGCa -5'
5605 5' -55.3 NC_001806.1 + 29201 0.66 0.918367
Target:  5'- gAGAGgacgGGGGGAgCGaCGAGGgCGACGUg -3'
miRNA:   3'- -UUUCa---CCUCCU-GUgGCUUCgGCUGCA- -5'
5605 5' -55.3 NC_001806.1 + 33985 0.66 0.900007
Target:  5'- ----cGGGGGuCGCCGggGCaggGGCGg -3'
miRNA:   3'- uuucaCCUCCuGUGGCuuCGg--CUGCa -5'
5605 5' -55.3 NC_001806.1 + 37922 0.71 0.659376
Target:  5'- ---aUGG-GGGCGCCGggGCCGucCGUc -3'
miRNA:   3'- uuucACCuCCUGUGGCuuCGGCu-GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.