miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 5' -56.2 NC_001806.1 + 74073 0.67 0.878681
Target:  5'- gGACCCaGGccCGUCGGGCgaucgAGGGCGc -3'
miRNA:   3'- gCUGGGaCCa-GCGGCUCGa----UUUCGCu -5'
5606 5' -56.2 NC_001806.1 + 4279 0.67 0.878681
Target:  5'- uCGACCCgccggGGcUGCCcGGCcgUGAAGCGGc -3'
miRNA:   3'- -GCUGGGa----CCaGCGGcUCG--AUUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 113749 0.67 0.872217
Target:  5'- cCGGCCCggagcugggcgggcaGGgcaaGCCGAGCUGAAucaccuaauGCGAg -3'
miRNA:   3'- -GCUGGGa--------------CCag--CGGCUCGAUUU---------CGCU- -5'
5606 5' -56.2 NC_001806.1 + 132141 0.67 0.868551
Target:  5'- uGGCCCUGGcggcgcgcgUUGCCGAGCaucccgacgcGCGGc -3'
miRNA:   3'- gCUGGGACC---------AGCGGCUCGauuu------CGCU- -5'
5606 5' -56.2 NC_001806.1 + 23698 0.67 0.864082
Target:  5'- gGGCCCUGGccucgaUCGCCGcGCggu-GCGc -3'
miRNA:   3'- gCUGGGACC------AGCGGCuCGauuuCGCu -5'
5606 5' -56.2 NC_001806.1 + 34558 0.67 0.864082
Target:  5'- gCGACCC-GGcCGCCGGG---GAGCGu -3'
miRNA:   3'- -GCUGGGaCCaGCGGCUCgauUUCGCu -5'
5606 5' -56.2 NC_001806.1 + 73303 0.67 0.848655
Target:  5'- uGGCCCgcgaGGUCGCCGcGUguucGCGGc -3'
miRNA:   3'- gCUGGGa---CCAGCGGCuCGauuuCGCU- -5'
5606 5' -56.2 NC_001806.1 + 22186 0.68 0.832451
Target:  5'- gCGGCCgUGuGggCGcCCGAGCU-GGGCGAc -3'
miRNA:   3'- -GCUGGgAC-Ca-GC-GGCUCGAuUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 47138 0.68 0.832451
Target:  5'- gGACCUcuUGGUCGaCGAGCUGuuuGCcGAc -3'
miRNA:   3'- gCUGGG--ACCAGCgGCUCGAUuu-CG-CU- -5'
5606 5' -56.2 NC_001806.1 + 132907 0.68 0.832451
Target:  5'- gCGGCCCUGGcCGaccuCGGGg-GGAGCGGg -3'
miRNA:   3'- -GCUGGGACCaGCg---GCUCgaUUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 73468 0.68 0.824074
Target:  5'- cCGGCCC-GGcCGCCGcccuGCUGGAGUu- -3'
miRNA:   3'- -GCUGGGaCCaGCGGCu---CGAUUUCGcu -5'
5606 5' -56.2 NC_001806.1 + 148080 0.68 0.815525
Target:  5'- uGGCCCgaugGG-CGCCGAGg-GGGGCGc -3'
miRNA:   3'- gCUGGGa---CCaGCGGCUCgaUUUCGCu -5'
5606 5' -56.2 NC_001806.1 + 74489 0.68 0.815525
Target:  5'- -aGCUCgGGUCugGCCGAGCUGcGGCGc -3'
miRNA:   3'- gcUGGGaCCAG--CGGCUCGAUuUCGCu -5'
5606 5' -56.2 NC_001806.1 + 69981 0.68 0.815525
Target:  5'- uGGCCCUGGUgGUCGGggacgcGCUGAGGg-- -3'
miRNA:   3'- gCUGGGACCAgCGGCU------CGAUUUCgcu -5'
5606 5' -56.2 NC_001806.1 + 58508 0.68 0.812927
Target:  5'- uCGGCCCcGGUCGCguuaaggaccuuggUGAGCUGcGGCc- -3'
miRNA:   3'- -GCUGGGaCCAGCG--------------GCUCGAUuUCGcu -5'
5606 5' -56.2 NC_001806.1 + 4751 0.68 0.80681
Target:  5'- gGGCCC-GGUCGCCG-GC---GGCGu -3'
miRNA:   3'- gCUGGGaCCAGCGGCuCGauuUCGCu -5'
5606 5' -56.2 NC_001806.1 + 23957 0.68 0.80681
Target:  5'- gGGCCgCcggagUGGUcCGCCGAGCgc-GGCGGg -3'
miRNA:   3'- gCUGG-G-----ACCA-GCGGCUCGauuUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 137643 0.69 0.788919
Target:  5'- gGACCCUGGgguugGCCGAGggcgccCUGAcGCGGu -3'
miRNA:   3'- gCUGGGACCag---CGGCUC------GAUUuCGCU- -5'
5606 5' -56.2 NC_001806.1 + 74531 0.69 0.77976
Target:  5'- gCGGCCCUGG--GCCaGcAGCUGGacAGCGAc -3'
miRNA:   3'- -GCUGGGACCagCGG-C-UCGAUU--UCGCU- -5'
5606 5' -56.2 NC_001806.1 + 121349 0.69 0.751531
Target:  5'- gGAgCCagUGGUCGgCGAGCUGGauGGCGc -3'
miRNA:   3'- gCUgGG--ACCAGCgGCUCGAUU--UCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.