miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 5' -56.2 NC_001806.1 + 47138 0.68 0.832451
Target:  5'- gGACCUcuUGGUCGaCGAGCUGuuuGCcGAc -3'
miRNA:   3'- gCUGGG--ACCAGCgGCUCGAUuu-CG-CU- -5'
5606 5' -56.2 NC_001806.1 + 50031 0.74 0.492293
Target:  5'- uGACCUggacgacaGGgcgGCCGAGCUGAGGCGGc -3'
miRNA:   3'- gCUGGGa-------CCag-CGGCUCGAUUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 50686 0.66 0.892411
Target:  5'- gCGGCCacgcgcgccauuCUGGcCGCCGGGCUcguccugcAGCGGc -3'
miRNA:   3'- -GCUGG------------GACCaGCGGCUCGAuu------UCGCU- -5'
5606 5' -56.2 NC_001806.1 + 52762 0.79 0.268171
Target:  5'- aCGACCC-GGUCGCCGAGCcccccgcuGCGGc -3'
miRNA:   3'- -GCUGGGaCCAGCGGCUCGauuu----CGCU- -5'
5606 5' -56.2 NC_001806.1 + 58068 0.71 0.662203
Target:  5'- aGGCCCgGGagGCCGAGCUcccGGCuGAa -3'
miRNA:   3'- gCUGGGaCCagCGGCUCGAuu-UCG-CU- -5'
5606 5' -56.2 NC_001806.1 + 58508 0.68 0.812927
Target:  5'- uCGGCCCcGGUCGCguuaaggaccuuggUGAGCUGcGGCc- -3'
miRNA:   3'- -GCUGGGaCCAGCG--------------GCUCGAUuUCGcu -5'
5606 5' -56.2 NC_001806.1 + 63960 0.66 0.892411
Target:  5'- uGGCCCgcagGGUCGCCuuGUUuguGGUGGc -3'
miRNA:   3'- gCUGGGa---CCAGCGGcuCGAuu-UCGCU- -5'
5606 5' -56.2 NC_001806.1 + 69981 0.68 0.815525
Target:  5'- uGGCCCUGGUgGUCGGggacgcGCUGAGGg-- -3'
miRNA:   3'- gCUGGGACCAgCGGCU------CGAUUUCgcu -5'
5606 5' -56.2 NC_001806.1 + 73108 0.74 0.480921
Target:  5'- cCGACCCggccgggccgccGGUCGCCGAgGCg--GGCGAg -3'
miRNA:   3'- -GCUGGGa-----------CCAGCGGCU-CGauuUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 73303 0.67 0.848655
Target:  5'- uGGCCCgcgaGGUCGCCGcGUguucGCGGc -3'
miRNA:   3'- gCUGGGa---CCAGCGGCuCGauuuCGCU- -5'
5606 5' -56.2 NC_001806.1 + 73468 0.68 0.824074
Target:  5'- cCGGCCC-GGcCGCCGcccuGCUGGAGUu- -3'
miRNA:   3'- -GCUGGGaCCaGCGGCu---CGAUUUCGcu -5'
5606 5' -56.2 NC_001806.1 + 74073 0.67 0.878681
Target:  5'- gGACCCaGGccCGUCGGGCgaucgAGGGCGc -3'
miRNA:   3'- gCUGGGaCCa-GCGGCUCGa----UUUCGCu -5'
5606 5' -56.2 NC_001806.1 + 74489 0.68 0.815525
Target:  5'- -aGCUCgGGUCugGCCGAGCUGcGGCGc -3'
miRNA:   3'- gcUGGGaCCAG--CGGCUCGAUuUCGCu -5'
5606 5' -56.2 NC_001806.1 + 74531 0.69 0.77976
Target:  5'- gCGGCCCUGG--GCCaGcAGCUGGacAGCGAc -3'
miRNA:   3'- -GCUGGGACCagCGG-C-UCGAUU--UCGCU- -5'
5606 5' -56.2 NC_001806.1 + 75259 0.66 0.917135
Target:  5'- aCGGCCCUGGgCGCgGccGCc--AGCGAc -3'
miRNA:   3'- -GCUGGGACCaGCGgCu-CGauuUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 76321 0.72 0.59102
Target:  5'- aCGACCCggcggcGGcCGCCGAGCUuguccGGGCa- -3'
miRNA:   3'- -GCUGGGa-----CCaGCGGCUCGAu----UUCGcu -5'
5606 5' -56.2 NC_001806.1 + 76627 0.66 0.892411
Target:  5'- aGACCCugcugaaggUGGUCGCCGuccc--GGCGAc -3'
miRNA:   3'- gCUGGG---------ACCAGCGGCucgauuUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 77104 0.66 0.905236
Target:  5'- gGGCguCCUGGgCGCCaaGAGCgccGAGCGGg -3'
miRNA:   3'- gCUG--GGACCaGCGG--CUCGau-UUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 79115 0.66 0.917135
Target:  5'- gGACCCcuuccUCGCgCGAGCUAuccucGGGCGGc -3'
miRNA:   3'- gCUGGGacc--AGCG-GCUCGAU-----UUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 89184 0.66 0.883587
Target:  5'- uGGCCC-GGUCGgcuucuguugcgucCCGA-CUGGGGCGAg -3'
miRNA:   3'- gCUGGGaCCAGC--------------GGCUcGAUUUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.