miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5607 3' -61.5 NC_001806.1 + 21918 0.69 0.458706
Target:  5'- gGGCCCgCGcGGCgGUggCCGGCCGCGAc -3'
miRNA:   3'- -CUGGG-GUaCCGgCGagGGUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 22179 0.67 0.591137
Target:  5'- cGCCCCGgcGGCCGUgugggcgCCCGagcugggcgacGCCGCGc -3'
miRNA:   3'- cUGGGGUa-CCGGCGa------GGGU-----------UGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 22457 0.66 0.640516
Target:  5'- cGGCCgCCGUGGCCaugaGCcgCCgauaCGACCGCGc -3'
miRNA:   3'- -CUGG-GGUACCGG----CGa-GG----GUUGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 22686 0.66 0.640516
Target:  5'- cGCCCUggGGCgGCUgUCcGCCGCGc -3'
miRNA:   3'- cUGGGGuaCCGgCGAgGGuUGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 22794 0.71 0.390421
Target:  5'- cGGCCgCGUGGCCGUcgagugCCUGGCCGCc- -3'
miRNA:   3'- -CUGGgGUACCGGCGa-----GGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 22927 0.67 0.581319
Target:  5'- gGACCCgCG-GGCCccGCuUCCCcGCCGCGc -3'
miRNA:   3'- -CUGGG-GUaCCGG--CG-AGGGuUGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 23068 0.71 0.374415
Target:  5'- aGGCCgCCGUGGCCGCcgUgCGcGCCGUGAg -3'
miRNA:   3'- -CUGG-GGUACCGGCGa-GgGU-UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 23151 0.68 0.542445
Target:  5'- aGCUCCGcGGCCGCcgCC--GCCGCGGa -3'
miRNA:   3'- cUGGGGUaCCGGCGa-GGguUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 23425 0.67 0.571535
Target:  5'- cGCCCCcgGGgcccgagcCCGCccccgCCCAGCCcGCGGc -3'
miRNA:   3'- cUGGGGuaCC--------GGCGa----GGGUUGG-CGCU- -5'
5607 3' -61.5 NC_001806.1 + 23496 0.74 0.256929
Target:  5'- cGCCCCGUGGCCGUgucgCgCCGGCCcGcCGAg -3'
miRNA:   3'- cUGGGGUACCGGCGa---G-GGUUGG-C-GCU- -5'
5607 3' -61.5 NC_001806.1 + 26401 0.73 0.288016
Target:  5'- cGGCCCCc--GCCGCcCCCGGCCGCc- -3'
miRNA:   3'- -CUGGGGuacCGGCGaGGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 26425 0.71 0.39859
Target:  5'- cGGgCCCAcGGgCGCcgUCCCAACCGCa- -3'
miRNA:   3'- -CUgGGGUaCCgGCG--AGGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 26500 0.69 0.504468
Target:  5'- cGCgCCCGcGGCCGC-CCCGccGCCGCc- -3'
miRNA:   3'- cUG-GGGUaCCGGCGaGGGU--UGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 27462 0.67 0.600983
Target:  5'- cGGCCCC--GGCCGC-CCUucCCGCu- -3'
miRNA:   3'- -CUGGGGuaCCGGCGaGGGuuGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 28116 0.66 0.660274
Target:  5'- cGAcCCCCAUGGagccCCGC-CCCGGa-GCGAg -3'
miRNA:   3'- -CU-GGGGUACC----GGCGaGGGUUggCGCU- -5'
5607 3' -61.5 NC_001806.1 + 28154 0.71 0.390421
Target:  5'- cGGCCUgAgGGCCGCcCCCAG-CGCGAg -3'
miRNA:   3'- -CUGGGgUaCCGGCGaGGGUUgGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 29387 0.7 0.415251
Target:  5'- uGACgCCCAgcgGGUCGUucagcaccaUCCCGAUCGUGAa -3'
miRNA:   3'- -CUG-GGGUa--CCGGCG---------AGGGUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 29920 0.66 0.676022
Target:  5'- cACCaCCAacagcagcggcggGGCgGCUCCCGccagucgcgaGCCGCGGc -3'
miRNA:   3'- cUGG-GGUa------------CCGgCGAGGGU----------UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 30178 0.68 0.513861
Target:  5'- cGCCCCG-GGCCccccGCgUCCgCGGCCGCGu -3'
miRNA:   3'- cUGGGGUaCCGG----CG-AGG-GUUGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 30220 0.66 0.689732
Target:  5'- cGCCCCcgcgcGGCCGUggcCCCGugCGUGc -3'
miRNA:   3'- cUGGGGua---CCGGCGa--GGGUugGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.