miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5607 3' -61.5 NC_001806.1 + 58 0.66 0.689732
Target:  5'- gGGgCCCGuuuucggcgucUGGCCGCUCCUccccCCGCu- -3'
miRNA:   3'- -CUgGGGU-----------ACCGGCGAGGGuu--GGCGcu -5'
5607 3' -61.5 NC_001806.1 + 1457 0.71 0.366581
Target:  5'- gGGCCCCcgGGCCGUcgUCgUcGCCGCGc -3'
miRNA:   3'- -CUGGGGuaCCGGCG--AGgGuUGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 1709 0.74 0.256929
Target:  5'- -uCCCCGaGGCCGCcgCCCGGCCGUc- -3'
miRNA:   3'- cuGGGGUaCCGGCGa-GGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 1898 0.68 0.542445
Target:  5'- aGACCCCcgGGCCGaacacgcggCCCGaggccagcACCGUGc -3'
miRNA:   3'- -CUGGGGuaCCGGCga-------GGGU--------UGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 2693 0.7 0.406867
Target:  5'- gGGCCCCGggGGCUGCcgcCgCCAGCCGCc- -3'
miRNA:   3'- -CUGGGGUa-CCGGCGa--G-GGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 4280 0.67 0.620734
Target:  5'- cGACCCgCcggGGCUGC--CCGGCCGUGAa -3'
miRNA:   3'- -CUGGG-Gua-CCGGCGagGGUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 4620 0.75 0.207949
Target:  5'- uGACgCCgAUGGCCGC-CaCCGGCCGUGAc -3'
miRNA:   3'- -CUG-GGgUACCGGCGaG-GGUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 4738 0.68 0.523324
Target:  5'- cGGCCCCG-GGCCGgggCCCggUCGCc- -3'
miRNA:   3'- -CUGGGGUaCCGGCga-GGGuuGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 5600 0.68 0.56179
Target:  5'- gGGgCCCGUGGCCGCggCCCGuUgGuCGAa -3'
miRNA:   3'- -CUgGGGUACCGGCGa-GGGUuGgC-GCU- -5'
5607 3' -61.5 NC_001806.1 + 5831 0.67 0.614803
Target:  5'- cGCCCguUGGCCGUccccgggccccccggUCCCGcCCGCc- -3'
miRNA:   3'- cUGGGguACCGGCG---------------AGGGUuGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 5898 0.68 0.542445
Target:  5'- cGGCCCaagGGCCGCccgCCUuGCCGCc- -3'
miRNA:   3'- -CUGGGguaCCGGCGa--GGGuUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 9735 0.67 0.610851
Target:  5'- -cCCCCAUcaCCGCcCCUAACCGCa- -3'
miRNA:   3'- cuGGGGUAccGGCGaGGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 11475 0.68 0.542445
Target:  5'- aGGCgggCCAUGGCCGCUUCguucACCGCGc -3'
miRNA:   3'- -CUGg--GGUACCGGCGAGGgu--UGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 16558 0.71 0.382362
Target:  5'- aAUCCCGUGGCCccaaucucaUCCCGGCUGCGu -3'
miRNA:   3'- cUGGGGUACCGGcg-------AGGGUUGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 17622 0.73 0.269022
Target:  5'- gGACgCCGUGGCgUGCUUCCGACUGCu- -3'
miRNA:   3'- -CUGgGGUACCG-GCGAGGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 20043 0.69 0.485912
Target:  5'- cGGCCCUcUGcgacucCCGCUCCCGGuCCGCGu -3'
miRNA:   3'- -CUGGGGuACc-----GGCGAGGGUU-GGCGCu -5'
5607 3' -61.5 NC_001806.1 + 20075 0.66 0.670125
Target:  5'- uGCUCCGcaGCCGCUCCCGucguUCGUGGc -3'
miRNA:   3'- cUGGGGUacCGGCGAGGGUu---GGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 21148 0.78 0.144224
Target:  5'- gGGCCCCAccgacgGGCCGCcgCCCAccccgagcccagACCGCGAc -3'
miRNA:   3'- -CUGGGGUa-----CCGGCGa-GGGU------------UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 21510 0.66 0.630625
Target:  5'- gGGCCCCGgcccggGGCCGCgaacgggaggCCCcGCuaCGCGGc -3'
miRNA:   3'- -CUGGGGUa-----CCGGCGa---------GGGuUG--GCGCU- -5'
5607 3' -61.5 NC_001806.1 + 21562 0.69 0.467686
Target:  5'- gGACCCCAcggaccgccUGucGCCGCgcccgccggCCCAGCCGCc- -3'
miRNA:   3'- -CUGGGGU---------AC--CGGCGa--------GGGUUGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.