miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5607 3' -61.5 NC_001806.1 + 111616 1.08 0.001076
Target:  5'- cGACCCCAUGGCCGCUCCCAACCGCGAc -3'
miRNA:   3'- -CUGGGGUACCGGCGAGGGUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 33341 0.79 0.115089
Target:  5'- cGCCCCuUGGCCGC-CCCGGCUGCa- -3'
miRNA:   3'- cUGGGGuACCGGCGaGGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 21148 0.78 0.144224
Target:  5'- gGGCCCCAccgacgGGCCGCcgCCCAccccgagcccagACCGCGAc -3'
miRNA:   3'- -CUGGGGUa-----CCGGCGa-GGGU------------UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 151463 0.77 0.163192
Target:  5'- cGGCCgCG-GGCgCGCUCCUGACCGCGGg -3'
miRNA:   3'- -CUGGgGUaCCG-GCGAGGGUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 150069 0.75 0.20158
Target:  5'- -cCCCCaAUGGCCGCgcgUCCCAggggaggcaggcccACCGCGGg -3'
miRNA:   3'- cuGGGG-UACCGGCG---AGGGU--------------UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 4620 0.75 0.207949
Target:  5'- uGACgCCgAUGGCCGC-CaCCGGCCGUGAc -3'
miRNA:   3'- -CUG-GGgUACCGGCGaG-GGUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 91352 0.74 0.233532
Target:  5'- gGACCCaCGUGGCgGCcaaCCCAcagguggACCGCGAg -3'
miRNA:   3'- -CUGGG-GUACCGgCGa--GGGU-------UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 67180 0.74 0.245284
Target:  5'- uGGCCCCA-GGCCuCgCCCAGCCGCu- -3'
miRNA:   3'- -CUGGGGUaCCGGcGaGGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 144845 0.74 0.251051
Target:  5'- gGGCCCCGUccGGacCCGCUCgCCGGCaCGCGAc -3'
miRNA:   3'- -CUGGGGUA--CC--GGCGAG-GGUUG-GCGCU- -5'
5607 3' -61.5 NC_001806.1 + 23496 0.74 0.256929
Target:  5'- cGCCCCGUGGCCGUgucgCgCCGGCCcGcCGAg -3'
miRNA:   3'- cUGGGGUACCGGCGa---G-GGUUGG-C-GCU- -5'
5607 3' -61.5 NC_001806.1 + 1709 0.74 0.256929
Target:  5'- -uCCCCGaGGCCGCcgCCCGGCCGUc- -3'
miRNA:   3'- cuGGGGUaCCGGCGa-GGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 17622 0.73 0.269022
Target:  5'- gGACgCCGUGGCgUGCUUCCGACUGCu- -3'
miRNA:   3'- -CUGgGGUACCG-GCGAGGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 103795 0.73 0.269022
Target:  5'- aGACCCCcgGGCgGCgccgCCgCGGCgGCGAc -3'
miRNA:   3'- -CUGGGGuaCCGgCGa---GG-GUUGgCGCU- -5'
5607 3' -61.5 NC_001806.1 + 26401 0.73 0.288016
Target:  5'- cGGCCCCc--GCCGCcCCCGGCCGCc- -3'
miRNA:   3'- -CUGGGGuacCGGCGaGGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 90264 0.73 0.294577
Target:  5'- cGCCCC-UGGUCGUgggCCUGACCGUGGa -3'
miRNA:   3'- cUGGGGuACCGGCGa--GGGUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 132133 0.73 0.297234
Target:  5'- cGACCCUAUGGCCcuggcgGCgcgcguugccgagcaUCCCGACgCGCGGc -3'
miRNA:   3'- -CUGGGGUACCGG------CG---------------AGGGUUG-GCGCU- -5'
5607 3' -61.5 NC_001806.1 + 131868 0.73 0.301255
Target:  5'- aGGCCgUCGUGGCgGCcgCCCGcGCCGCGAc -3'
miRNA:   3'- -CUGG-GGUACCGgCGa-GGGU-UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 57084 0.72 0.321985
Target:  5'- aGACUCCAcagaacaagGGCCGCUCCacCGGCCGCc- -3'
miRNA:   3'- -CUGGGGUa--------CCGGCGAGG--GUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 32542 0.72 0.343763
Target:  5'- cGACCCCcUGGCgGuCUUCCAGCCGg-- -3'
miRNA:   3'- -CUGGGGuACCGgC-GAGGGUUGGCgcu -5'
5607 3' -61.5 NC_001806.1 + 107038 0.71 0.35886
Target:  5'- cGCCCgCggGGCCGCgggCUguGCCGCGGa -3'
miRNA:   3'- cUGGG-GuaCCGGCGa--GGguUGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.