miRNA display CGI


Results 61 - 80 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 107918 0.67 0.978487
Target:  5'- aGCGGCuggugcGCACCCaaaaccagcgcgACCugGGgCUCg -3'
miRNA:   3'- -CGCCGuauuu-UGUGGG------------UGGugUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 101135 0.67 0.978487
Target:  5'- aCGGCc---AGCACCCGCCcCAcCUCg -3'
miRNA:   3'- cGCCGuauuUUGUGGGUGGuGUcGAG- -5'
5609 3' -51.6 NC_001806.1 + 112081 0.67 0.975998
Target:  5'- gGCGcGCAUcgccaGuuGCGCgCCAUCcaACAGCUCg -3'
miRNA:   3'- -CGC-CGUA-----UuuUGUG-GGUGG--UGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 46655 0.67 0.975998
Target:  5'- uGCGGCGUc--GCGCCCcACCG-AGCg- -3'
miRNA:   3'- -CGCCGUAuuuUGUGGG-UGGUgUCGag -5'
5609 3' -51.6 NC_001806.1 + 84688 0.67 0.975998
Target:  5'- -aGGUAUuuguACcaaaGCCCACCGC-GCUCg -3'
miRNA:   3'- cgCCGUAuuu-UG----UGGGUGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 16919 0.67 0.975998
Target:  5'- aGgGGCcaugagGAAACACCCGggACGGCUUu -3'
miRNA:   3'- -CgCCGua----UUUUGUGGGUggUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 3556 0.68 0.952443
Target:  5'- cGCGGCG---GACAgCCGCCccaggGCGGCg- -3'
miRNA:   3'- -CGCCGUauuUUGUgGGUGG-----UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 132067 0.68 0.952443
Target:  5'- aGCGuCGUGGGGCccGCCCGCCGCccCUCg -3'
miRNA:   3'- -CGCcGUAUUUUG--UGGGUGGUGucGAG- -5'
5609 3' -51.6 NC_001806.1 + 132199 0.68 0.952443
Target:  5'- gGCGGcCAUucgcGACACCCcCCAguGCg- -3'
miRNA:   3'- -CGCC-GUAuu--UUGUGGGuGGUguCGag -5'
5609 3' -51.6 NC_001806.1 + 136753 0.68 0.952443
Target:  5'- gGUGGCGUugaGGAGCGCgugaaagaucgCCGCCuGCAGCUg -3'
miRNA:   3'- -CGCCGUA---UUUUGUG-----------GGUGG-UGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 24243 0.68 0.952443
Target:  5'- cGCGGCAgc--ACGCCUACC-UGGCg- -3'
miRNA:   3'- -CGCCGUauuuUGUGGGUGGuGUCGag -5'
5609 3' -51.6 NC_001806.1 + 95309 0.68 0.952443
Target:  5'- cGCGGCGgac-GCGCCCAaggGCGGCg- -3'
miRNA:   3'- -CGCCGUauuuUGUGGGUgg-UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 126140 0.68 0.948128
Target:  5'- gGCGGCGaGGccGGCGCCgACaCGCGGCg- -3'
miRNA:   3'- -CGCCGUaUU--UUGUGGgUG-GUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 51448 0.68 0.948128
Target:  5'- cCGGCGUuucugaccuGCACCgAUCGCAGCg- -3'
miRNA:   3'- cGCCGUAuuu------UGUGGgUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 119032 0.68 0.956511
Target:  5'- gGCGGCGcu--GCGCCUugCGuggGGCUCg -3'
miRNA:   3'- -CGCCGUauuuUGUGGGugGUg--UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 43276 0.68 0.960335
Target:  5'- cGCGGCcguuc-CGCCCucggaggcggaGCCGCGGCUg -3'
miRNA:   3'- -CGCCGuauuuuGUGGG-----------UGGUGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 26255 0.68 0.96392
Target:  5'- gGCGGCGggcAGCccggGCCCcCCGCGGC-Cg -3'
miRNA:   3'- -CGCCGUauuUUG----UGGGuGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 50754 0.68 0.96392
Target:  5'- gGUGGCGUGcguGACACUgGCCGC-GUUUg -3'
miRNA:   3'- -CGCCGUAUu--UUGUGGgUGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 50150 0.68 0.960335
Target:  5'- cCGGCccc-GACGCCgCGguguuCCGCAGCUCg -3'
miRNA:   3'- cGCCGuauuUUGUGG-GU-----GGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 13554 0.68 0.96392
Target:  5'- uGCGGCAggc-GCGCuCCAaCACGGCg- -3'
miRNA:   3'- -CGCCGUauuuUGUG-GGUgGUGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.