miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 147214 0.67 0.978487
Target:  5'- gGCGGCGgaaGAGGCgGCCC-CCGCGGg-- -3'
miRNA:   3'- -CGCCGUa--UUUUG-UGGGuGGUGUCgag -5'
5609 3' -51.6 NC_001806.1 + 60428 0.67 0.978487
Target:  5'- cCGGCGggc--CAUCCGCCGggaacacacCAGCUCg -3'
miRNA:   3'- cGCCGUauuuuGUGGGUGGU---------GUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 12209 0.67 0.975998
Target:  5'- -gGGCAUuuguguCCCaugggguaguGCCACAGCUCu -3'
miRNA:   3'- cgCCGUAuuuuguGGG----------UGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 2346 0.67 0.975998
Target:  5'- aGCGGCgaGUAcAGCA-CCACCACGcGCa- -3'
miRNA:   3'- -CGCCG--UAUuUUGUgGGUGGUGU-CGag -5'
5609 3' -51.6 NC_001806.1 + 16919 0.67 0.975998
Target:  5'- aGgGGCcaugagGAAACACCCGggACGGCUUu -3'
miRNA:   3'- -CgCCGua----UUUUGUGGGUggUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 101135 0.67 0.978487
Target:  5'- aCGGCc---AGCACCCGCCcCAcCUCg -3'
miRNA:   3'- cGCCGuauuUUGUGGGUGGuGUcGAG- -5'
5609 3' -51.6 NC_001806.1 + 107918 0.67 0.978487
Target:  5'- aGCGGCuggugcGCACCCaaaaccagcgcgACCugGGgCUCg -3'
miRNA:   3'- -CGCCGuauuu-UGUGGG------------UGGugUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 124237 0.67 0.978487
Target:  5'- cCGGCc----GCACCCAcaacauCCGCGGCUUc -3'
miRNA:   3'- cGCCGuauuuUGUGGGU------GGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 26488 0.67 0.970399
Target:  5'- cGCGGUcaGGAGCGCgC-CCGCGGC-Cg -3'
miRNA:   3'- -CGCCGuaUUUUGUGgGuGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 72559 0.67 0.970399
Target:  5'- gGgGGCccgGGGccACACCCGCCcACAGC-Cg -3'
miRNA:   3'- -CgCCGua-UUU--UGUGGGUGG-UGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 78887 0.67 0.970399
Target:  5'- gGCGGCAcagcucccGCGCCUGuCCGC-GCUCa -3'
miRNA:   3'- -CGCCGUauuu----UGUGGGU-GGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 22241 0.67 0.973305
Target:  5'- cGCGGCugcuguACACCCcggacgcggagGCCAUgggguGGCUCc -3'
miRNA:   3'- -CGCCGuauuu-UGUGGG-----------UGGUG-----UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 77961 0.67 0.973305
Target:  5'- cGCGGCG----GC-CCCgggGCCGCcGCUCg -3'
miRNA:   3'- -CGCCGUauuuUGuGGG---UGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 88938 0.67 0.973305
Target:  5'- gGUGGgGUuGAAC-CCCGCCGgGGCg- -3'
miRNA:   3'- -CGCCgUAuUUUGuGGGUGGUgUCGag -5'
5609 3' -51.6 NC_001806.1 + 108656 0.67 0.973305
Target:  5'- uGCGGaCAU---GCGCCCGCgGcCAGCg- -3'
miRNA:   3'- -CGCC-GUAuuuUGUGGGUGgU-GUCGag -5'
5609 3' -51.6 NC_001806.1 + 125208 0.67 0.973305
Target:  5'- gGCGGC-----GCGCUCaACCACcGCUCc -3'
miRNA:   3'- -CGCCGuauuuUGUGGG-UGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 90843 0.67 0.973305
Target:  5'- gGCGGuCGUGGG--ACCCGCCGCcguGGCa- -3'
miRNA:   3'- -CGCC-GUAUUUugUGGGUGGUG---UCGag -5'
5609 3' -51.6 NC_001806.1 + 84688 0.67 0.975998
Target:  5'- -aGGUAUuuguACcaaaGCCCACCGC-GCUCg -3'
miRNA:   3'- cgCCGUAuuu-UG----UGGGUGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 112081 0.67 0.975998
Target:  5'- gGCGcGCAUcgccaGuuGCGCgCCAUCcaACAGCUCg -3'
miRNA:   3'- -CGC-CGUA-----UuuUGUG-GGUGG--UGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 77164 0.67 0.970399
Target:  5'- cGUGGCccAAcACGCCgACCugAGCg- -3'
miRNA:   3'- -CGCCGuaUUuUGUGGgUGGugUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.