miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 2262 0.74 0.700823
Target:  5'- aGCaGGCA--GGACAgCCCGCCGC-GCUCg -3'
miRNA:   3'- -CG-CCGUauUUUGU-GGGUGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 147983 0.75 0.690349
Target:  5'- aGgGGCc--AGACGCCCcccgcggcGCCGCGGCUCg -3'
miRNA:   3'- -CgCCGuauUUUGUGGG--------UGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 90355 0.75 0.669251
Target:  5'- cGCGGUGUcccugaaacuGACGCCCucgcACUACAGCUCg -3'
miRNA:   3'- -CGCCGUAuu--------UUGUGGG----UGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 21868 0.75 0.669251
Target:  5'- gGCGGCGgcGAGgACCC-CCGCGGcCUCc -3'
miRNA:   3'- -CGCCGUauUUUgUGGGuGGUGUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 140027 0.8 0.424493
Target:  5'- cGCGGCG-AAAGCGCCCggagcGCCACGGC-Cg -3'
miRNA:   3'- -CGCCGUaUUUUGUGGG-----UGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 57170 0.72 0.809658
Target:  5'- uGCGcGCAUAAA--GCCCAgCACGGCg- -3'
miRNA:   3'- -CGC-CGUAUUUugUGGGUgGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 107222 0.72 0.809658
Target:  5'- uCGGCGUAcgacgcaguGGCGCCCAgCGCAGCcCa -3'
miRNA:   3'- cGCCGUAUu--------UUGUGGGUgGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 128229 0.71 0.866521
Target:  5'- cGCGGCGUcggccgugcacaggAAGACGCCCA--ACAGCa- -3'
miRNA:   3'- -CGCCGUA--------------UUUUGUGGGUggUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 119859 0.71 0.861021
Target:  5'- cGUGGCGUGGGgcgggcgacGCGCCCGCCcuccGCuGCUg -3'
miRNA:   3'- -CGCCGUAUUU---------UGUGGGUGG----UGuCGAg -5'
5609 3' -51.6 NC_001806.1 + 77395 0.71 0.861021
Target:  5'- cGCGGCGgcc-GCGCCCgcGCCcCuGCUCg -3'
miRNA:   3'- -CGCCGUauuuUGUGGG--UGGuGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 56448 0.71 0.861021
Target:  5'- -gGGCG-GAAGCGCCUGaCACAGCUCc -3'
miRNA:   3'- cgCCGUaUUUUGUGGGUgGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 4444 0.71 0.860227
Target:  5'- gGCGGCGUccgcccgGGGGCugCCggcGCCGC-GCUCg -3'
miRNA:   3'- -CGCCGUA-------UUUUGugGG---UGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 131166 0.71 0.852975
Target:  5'- cGUGGgGUuguuGGACGCCCACCACA--UCg -3'
miRNA:   3'- -CGCCgUAu---UUUGUGGGUGGUGUcgAG- -5'
5609 3' -51.6 NC_001806.1 + 4186 0.71 0.852975
Target:  5'- gGCGGgGgcccGGCGCCgGgCCACGGCUCc -3'
miRNA:   3'- -CGCCgUauu-UUGUGGgU-GGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 14452 0.71 0.844713
Target:  5'- gGCGGCA-AGAACAgCCC-CCACgaGGCUUc -3'
miRNA:   3'- -CGCCGUaUUUUGU-GGGuGGUG--UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 114268 0.72 0.836242
Target:  5'- cGUGGUAguGGACggGCCCGCCAU-GCUCa -3'
miRNA:   3'- -CGCCGUauUUUG--UGGGUGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 100136 0.72 0.836242
Target:  5'- cGCGGCuau-GGCcCCCACCaacGCGGCUa -3'
miRNA:   3'- -CGCCGuauuUUGuGGGUGG---UGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 51150 0.72 0.835383
Target:  5'- -gGGC-UGGGAgGCCCGCCACgcccauaAGCUCc -3'
miRNA:   3'- cgCCGuAUUUUgUGGGUGGUG-------UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 46229 0.72 0.82757
Target:  5'- gGCGGCGgAGAcCACCCGCgGCAGgaaaUCg -3'
miRNA:   3'- -CGCCGUaUUUuGUGGGUGgUGUCg---AG- -5'
5609 3' -51.6 NC_001806.1 + 42601 0.72 0.82757
Target:  5'- aGCGaGCGUAGGgacGCGCCCugaucauacugcGCCGCGGCg- -3'
miRNA:   3'- -CGC-CGUAUUU---UGUGGG------------UGGUGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.