miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 46151 0.69 0.922728
Target:  5'- aGgGGCcgGAcgcACACCCACCACcGCc- -3'
miRNA:   3'- -CgCCGuaUUu--UGUGGGUGGUGuCGag -5'
5609 3' -51.6 NC_001806.1 + 46202 0.66 0.984812
Target:  5'- gGUGGCGacuAAgGCCC-CCGCGGCc- -3'
miRNA:   3'- -CGCCGUauuUUgUGGGuGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 46229 0.72 0.82757
Target:  5'- gGCGGCGgAGAcCACCCGCgGCAGgaaaUCg -3'
miRNA:   3'- -CGCCGUaUUUuGUGGGUGgUGUCg---AG- -5'
5609 3' -51.6 NC_001806.1 + 46655 0.67 0.975998
Target:  5'- uGCGGCGUc--GCGCCCcACCG-AGCg- -3'
miRNA:   3'- -CGCCGUAuuuUGUGGG-UGGUgUCGag -5'
5609 3' -51.6 NC_001806.1 + 49003 0.66 0.984812
Target:  5'- cCGGCG----GCACCUACCcCGGcCUCc -3'
miRNA:   3'- cGCCGUauuuUGUGGGUGGuGUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 50150 0.68 0.960335
Target:  5'- cCGGCccc-GACGCCgCGguguuCCGCAGCUCg -3'
miRNA:   3'- cGCCGuauuUUGUGG-GU-----GGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 50505 0.66 0.988012
Target:  5'- cGCGGuCGUgggggccgagcacGAGGCGCUgggcgaCACCGCAGCg- -3'
miRNA:   3'- -CGCC-GUA-------------UUUUGUGG------GUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 50682 0.7 0.904398
Target:  5'- cGCGGCGgcc-ACGCgCGCCAUucuggccgccgGGCUCg -3'
miRNA:   3'- -CGCCGUauuuUGUGgGUGGUG-----------UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 50754 0.68 0.96392
Target:  5'- gGUGGCGUGcguGACACUgGCCGC-GUUUg -3'
miRNA:   3'- -CGCCGUAUu--UUGUGGgUGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 51150 0.72 0.835383
Target:  5'- -gGGC-UGGGAgGCCCGCCACgcccauaAGCUCc -3'
miRNA:   3'- cgCCGuAUUUUgUGGGUGGUG-------UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 51405 0.71 0.876436
Target:  5'- cGCGGCcguGGGCGCCUugCgGCAGCg- -3'
miRNA:   3'- -CGCCGuauUUUGUGGGugG-UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 51448 0.68 0.948128
Target:  5'- cCGGCGUuucugaccuGCACCgAUCGCAGCg- -3'
miRNA:   3'- cGCCGUAuuu------UGUGGgUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 51877 0.69 0.938242
Target:  5'- cCGGCGgacccAAgccgcccagcaccGACACCgCACUGCGGCUCa -3'
miRNA:   3'- cGCCGUa----UU-------------UUGUGG-GUGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 52038 0.72 0.809658
Target:  5'- gGCGGCAgcccgGAGGCGCCCGCgGaaacGUUCg -3'
miRNA:   3'- -CGCCGUa----UUUUGUGGGUGgUgu--CGAG- -5'
5609 3' -51.6 NC_001806.1 + 54870 0.67 0.978487
Target:  5'- cGCGGg--GGGACcuGgCCGCCGCAGcCUCg -3'
miRNA:   3'- -CGCCguaUUUUG--UgGGUGGUGUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 55027 0.66 0.988165
Target:  5'- gGCGGCGgccguGCACgUCGCCuugaACGGCUg -3'
miRNA:   3'- -CGCCGUauuu-UGUG-GGUGG----UGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 56448 0.71 0.861021
Target:  5'- -gGGCG-GAAGCGCCUGaCACAGCUCc -3'
miRNA:   3'- cgCCGUaUUUUGUGGGUgGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 56490 0.69 0.916875
Target:  5'- aUGGCcuccgaGAAACACCUgggGCCACAGCg- -3'
miRNA:   3'- cGCCGua----UUUUGUGGG---UGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 56735 0.67 0.978487
Target:  5'- gGCGGCGggaAAGAgACUCGCCuGCGGUg- -3'
miRNA:   3'- -CGCCGUa--UUUUgUGGGUGG-UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 56862 0.66 0.984812
Target:  5'- cGCGGCGggcccACcgAUCCACCAgAGCg- -3'
miRNA:   3'- -CGCCGUauuu-UG--UGGGUGGUgUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.