miRNA display CGI


Results 21 - 40 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 16919 0.67 0.975998
Target:  5'- aGgGGCcaugagGAAACACCCGggACGGCUUu -3'
miRNA:   3'- -CgCCGua----UUUUGUGGGUggUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 20195 0.67 0.973305
Target:  5'- cGCGGaGUcgGGCACggCGCCAguGCUCg -3'
miRNA:   3'- -CGCCgUAuuUUGUGg-GUGGUguCGAG- -5'
5609 3' -51.6 NC_001806.1 + 21286 0.7 0.910764
Target:  5'- cCGGCGggacgGGAGgGCCC-CCGCGGCg- -3'
miRNA:   3'- cGCCGUa----UUUUgUGGGuGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 21868 0.75 0.669251
Target:  5'- gGCGGCGgcGAGgACCC-CCGCGGcCUCc -3'
miRNA:   3'- -CGCCGUauUUUgUGGGuGGUGUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 22241 0.67 0.973305
Target:  5'- cGCGGCugcuguACACCCcggacgcggagGCCAUgggguGGCUCc -3'
miRNA:   3'- -CGCCGuauuu-UGUGGG-----------UGGUG-----UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 22383 0.69 0.922728
Target:  5'- cGUGGCGcGGGccguGC-CCCACCugGGCUa -3'
miRNA:   3'- -CGCCGUaUUU----UGuGGGUGGugUCGAg -5'
5609 3' -51.6 NC_001806.1 + 23361 0.7 0.883793
Target:  5'- aGCGGCGc-GGACGCCC-CC--GGCUCg -3'
miRNA:   3'- -CGCCGUauUUUGUGGGuGGugUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 23459 0.66 0.988165
Target:  5'- cGCGGCGccccg-GgCCGCCGCGGCg- -3'
miRNA:   3'- -CGCCGUauuuugUgGGUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 24026 0.66 0.982886
Target:  5'- uGCgGGCcgGAcACGgCCGCCugGGCg- -3'
miRNA:   3'- -CG-CCGuaUUuUGUgGGUGGugUCGag -5'
5609 3' -51.6 NC_001806.1 + 24243 0.68 0.952443
Target:  5'- cGCGGCAgc--ACGCCUACC-UGGCg- -3'
miRNA:   3'- -CGCCGUauuuUGUGGGUGGuGUCGag -5'
5609 3' -51.6 NC_001806.1 + 24541 0.66 0.984812
Target:  5'- gGCGGCGgccucgGGGAcCACCgaCGCCAUGGCg- -3'
miRNA:   3'- -CGCCGUa-----UUUU-GUGG--GUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 26255 0.68 0.96392
Target:  5'- gGCGGCGggcAGCccggGCCCcCCGCGGC-Cg -3'
miRNA:   3'- -CGCCGUauuUUG----UGGGuGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 26488 0.67 0.970399
Target:  5'- cGCGGUcaGGAGCGCgC-CCGCGGC-Cg -3'
miRNA:   3'- -CGCCGuaUUUUGUGgGuGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 26956 0.67 0.978487
Target:  5'- uCGGCcgcc--CGCCUggcgcGCCGCGGCUCg -3'
miRNA:   3'- cGCCGuauuuuGUGGG-----UGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 29827 0.68 0.956511
Target:  5'- cGgGGCGUcucACgcagccccccaGCCgGCCGCGGCUCg -3'
miRNA:   3'- -CgCCGUAuuuUG-----------UGGgUGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 31818 0.66 0.982886
Target:  5'- cUGGCAUGGA--GCCagaACCACAGUg- -3'
miRNA:   3'- cGCCGUAUUUugUGGg--UGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 32312 0.66 0.988165
Target:  5'- cCGGUcccccGGCACCCGCCACucCUCc -3'
miRNA:   3'- cGCCGuauu-UUGUGGGUGGUGucGAG- -5'
5609 3' -51.6 NC_001806.1 + 41693 0.66 0.98078
Target:  5'- gGCGGCGUGc--CGCCCGCCGugucCUCc -3'
miRNA:   3'- -CGCCGUAUuuuGUGGGUGGUguc-GAG- -5'
5609 3' -51.6 NC_001806.1 + 42601 0.72 0.82757
Target:  5'- aGCGaGCGUAGGgacGCGCCCugaucauacugcGCCGCGGCg- -3'
miRNA:   3'- -CGC-CGUAUUU---UGUGGG------------UGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 43276 0.68 0.960335
Target:  5'- cGCGGCcguuc-CGCCCucggaggcggaGCCGCGGCUg -3'
miRNA:   3'- -CGCCGuauuuuGUGGG-----------UGGUGUCGAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.