miRNA display CGI


Results 1 - 20 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 303 0.7 0.893686
Target:  5'- cGCGGCcccgccccccACGCCCGCCGCGcGCg- -3'
miRNA:   3'- -CGCCGuauuu-----UGUGGGUGGUGU-CGag -5'
5609 3' -51.6 NC_001806.1 + 1811 0.7 0.897778
Target:  5'- cGCGGUAgc--GCACguugCCGCCGCGGCa- -3'
miRNA:   3'- -CGCCGUauuuUGUG----GGUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 2262 0.74 0.700823
Target:  5'- aGCaGGCA--GGACAgCCCGCCGC-GCUCg -3'
miRNA:   3'- -CG-CCGUauUUUGU-GGGUGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 2301 0.67 0.975998
Target:  5'- gGCGGCccccccGAGGC-CCCGCCGcCGGC-Ca -3'
miRNA:   3'- -CGCCGua----UUUUGuGGGUGGU-GUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 2346 0.67 0.975998
Target:  5'- aGCGGCgaGUAcAGCA-CCACCACGcGCa- -3'
miRNA:   3'- -CGCCG--UAUuUUGUgGGUGGUGU-CGag -5'
5609 3' -51.6 NC_001806.1 + 2686 0.67 0.978487
Target:  5'- uGUGGCugggccccgGGGGCugCCGCCGcCAGC-Cg -3'
miRNA:   3'- -CGCCGua-------UUUUGugGGUGGU-GUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 3022 0.66 0.982886
Target:  5'- gGCGGCGUccgguGCGCUgGCCGCcGC-Cg -3'
miRNA:   3'- -CGCCGUAuuu--UGUGGgUGGUGuCGaG- -5'
5609 3' -51.6 NC_001806.1 + 3091 0.68 0.96392
Target:  5'- cGCGGCG----GCGgCgGCCGCggAGCUCg -3'
miRNA:   3'- -CGCCGUauuuUGUgGgUGGUG--UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 3225 0.69 0.932086
Target:  5'- cGCGcaggcGCAUGAGcaccagcgcgucgcGCACgaACCGCAGCUCg -3'
miRNA:   3'- -CGC-----CGUAUUU--------------UGUGggUGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 3556 0.68 0.952443
Target:  5'- cGCGGCG---GACAgCCGCCccaggGCGGCg- -3'
miRNA:   3'- -CGCCGUauuUUGUgGGUGG-----UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 4044 0.69 0.93366
Target:  5'- cGCGGCGUcgcccagcucGGGCGCCCA-CACGGC-Cg -3'
miRNA:   3'- -CGCCGUAu---------UUUGUGGGUgGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 4186 0.71 0.852975
Target:  5'- gGCGGgGgcccGGCGCCgGgCCACGGCUCc -3'
miRNA:   3'- -CGCCgUauu-UUGUGGgU-GGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 4267 0.7 0.883793
Target:  5'- uCGGCGUccAGCucgACCCGCCGgGGCUg -3'
miRNA:   3'- cGCCGUAuuUUG---UGGGUGGUgUCGAg -5'
5609 3' -51.6 NC_001806.1 + 4444 0.71 0.860227
Target:  5'- gGCGGCGUccgcccgGGGGCugCCggcGCCGC-GCUCg -3'
miRNA:   3'- -CGCCGUA-------UUUUGugGG---UGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 6130 0.68 0.956511
Target:  5'- cCGGCGcGAccGACGCCCGCagACGGCg- -3'
miRNA:   3'- cGCCGUaUU--UUGUGGGUGg-UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 11858 0.69 0.928324
Target:  5'- gGCGGguUGGuauACGCUCGCCGgGGC-Ca -3'
miRNA:   3'- -CGCCguAUUu--UGUGGGUGGUgUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 12209 0.67 0.975998
Target:  5'- -gGGCAUuuguguCCCaugggguaguGCCACAGCUCu -3'
miRNA:   3'- cgCCGUAuuuuguGGG----------UGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 13554 0.68 0.96392
Target:  5'- uGCGGCAggc-GCGCuCCAaCACGGCg- -3'
miRNA:   3'- -CGCCGUauuuUGUG-GGUgGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 14452 0.71 0.844713
Target:  5'- gGCGGCA-AGAACAgCCC-CCACgaGGCUUc -3'
miRNA:   3'- -CGCCGUaUUUUGU-GGGuGGUG--UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 16480 0.66 0.988165
Target:  5'- aUGGUcgAGGGgggcUugCCGCCGCGGCUg -3'
miRNA:   3'- cGCCGuaUUUU----GugGGUGGUGUCGAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.