miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 148582 0.66 0.982886
Target:  5'- -gGGCGUc--ACGCCCACUAucagguacacCAGCUUg -3'
miRNA:   3'- cgCCGUAuuuUGUGGGUGGU----------GUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 31818 0.66 0.982886
Target:  5'- cUGGCAUGGA--GCCagaACCACAGUg- -3'
miRNA:   3'- cGCCGUAUUUugUGGg--UGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 49003 0.66 0.984812
Target:  5'- cCGGCG----GCACCUACCcCGGcCUCc -3'
miRNA:   3'- cGCCGUauuuUGUGGGUGGuGUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 41693 0.66 0.98078
Target:  5'- gGCGGCGUGc--CGCCCGCCGugucCUCc -3'
miRNA:   3'- -CGCCGUAUuuuGUGGGUGGUguc-GAG- -5'
5609 3' -51.6 NC_001806.1 + 128521 0.66 0.98078
Target:  5'- uGCGGCAUGGccAUGCggGCCGCAGC-Ca -3'
miRNA:   3'- -CGCCGUAUUu-UGUGggUGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 86670 0.66 0.98078
Target:  5'- gGCGGcCGUGAGGC-CgCGgCACAGCa- -3'
miRNA:   3'- -CGCC-GUAUUUUGuGgGUgGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 101021 0.66 0.982886
Target:  5'- aGCGGCG------GCCCGCgGC-GCUCg -3'
miRNA:   3'- -CGCCGUauuuugUGGGUGgUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 87671 0.66 0.984627
Target:  5'- gGCGGCGUAGuAgGCggggaugUCGCgAUAGCUCa -3'
miRNA:   3'- -CGCCGUAUUuUgUG-------GGUGgUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 24026 0.66 0.982886
Target:  5'- uGCgGGCcgGAcACGgCCGCCugGGCg- -3'
miRNA:   3'- -CG-CCGuaUUuUGUgGGUGGugUCGag -5'
5609 3' -51.6 NC_001806.1 + 64479 0.66 0.98078
Target:  5'- uGCGGUA-AAGGCgagcggaccgGCUCACCAgCGGCUUg -3'
miRNA:   3'- -CGCCGUaUUUUG----------UGGGUGGU-GUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 67737 0.66 0.98078
Target:  5'- -aGGCG-GAAcCACCCACCccACAGC-Ca -3'
miRNA:   3'- cgCCGUaUUUuGUGGGUGG--UGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 100106 0.66 0.98078
Target:  5'- cGCGGCcgGcuGAcCGCCCGCCugGCGGUc- -3'
miRNA:   3'- -CGCCGuaU--UUuGUGGGUGG--UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 114658 0.66 0.98078
Target:  5'- cGCGGCcgGGGagaacGCGCUgACCuACGcGCUCa -3'
miRNA:   3'- -CGCCGuaUUU-----UGUGGgUGG-UGU-CGAG- -5'
5609 3' -51.6 NC_001806.1 + 3022 0.66 0.982886
Target:  5'- gGCGGCGUccgguGCGCUgGCCGCcGC-Cg -3'
miRNA:   3'- -CGCCGUAuuu--UGUGGgUGGUGuCGaG- -5'
5609 3' -51.6 NC_001806.1 + 46202 0.66 0.984812
Target:  5'- gGUGGCGacuAAgGCCC-CCGCGGCc- -3'
miRNA:   3'- -CGCCGUauuUUgUGGGuGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 124961 0.66 0.984812
Target:  5'- uCGGCcgAGAccaACACCCACgGCcuGGCg- -3'
miRNA:   3'- cGCCGuaUUU---UGUGGGUGgUG--UCGag -5'
5609 3' -51.6 NC_001806.1 + 100632 0.66 0.980337
Target:  5'- cCGGCGaucccggcCugCCGCCGCcGCUCg -3'
miRNA:   3'- cGCCGUauuuu---GugGGUGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 123899 0.66 0.98078
Target:  5'- cCGcGCGUcccccGAGACGCCCGgUACGGCg- -3'
miRNA:   3'- cGC-CGUA-----UUUUGUGGGUgGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 68281 0.66 0.988165
Target:  5'- aCGGCcaagcuGCGCgCCGCCAUGGCg- -3'
miRNA:   3'- cGCCGuauuu-UGUG-GGUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 108590 0.66 0.98078
Target:  5'- aCGGUccacguCACCCACCGCuAGCa- -3'
miRNA:   3'- cGCCGuauuuuGUGGGUGGUG-UCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.