miRNA display CGI


Results 1 - 20 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 109198 1.11 0.004933
Target:  5'- uGCGGCAUAAAACACCCACCACAGCUCc -3'
miRNA:   3'- -CGCCGUAUUUUGUGGGUGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 140027 0.8 0.424493
Target:  5'- cGCGGCG-AAAGCGCCCggagcGCCACGGC-Cg -3'
miRNA:   3'- -CGCCGUaUUUUGUGGG-----UGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 21868 0.75 0.669251
Target:  5'- gGCGGCGgcGAGgACCC-CCGCGGcCUCc -3'
miRNA:   3'- -CGCCGUauUUUgUGGGuGGUGUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 90355 0.75 0.669251
Target:  5'- cGCGGUGUcccugaaacuGACGCCCucgcACUACAGCUCg -3'
miRNA:   3'- -CGCCGUAuu--------UUGUGGG----UGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 147983 0.75 0.690349
Target:  5'- aGgGGCc--AGACGCCCcccgcggcGCCGCGGCUCg -3'
miRNA:   3'- -CgCCGuauUUUGUGGG--------UGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 2262 0.74 0.700823
Target:  5'- aGCaGGCA--GGACAgCCCGCCGC-GCUCg -3'
miRNA:   3'- -CG-CCGUauUUUGU-GGGUGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 67122 0.74 0.700823
Target:  5'- cGCGcGCGU---GCACCCGCUcuCGGCUCg -3'
miRNA:   3'- -CGC-CGUAuuuUGUGGGUGGu-GUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 128570 0.74 0.711236
Target:  5'- cGCGGuCGUAGcgggaggucacGGCGCCgACCACGGCa- -3'
miRNA:   3'- -CGCC-GUAUU-----------UUGUGGgUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 66427 0.74 0.721576
Target:  5'- uGCGGU--GGGGCGCCC-CCGCAGgUCc -3'
miRNA:   3'- -CGCCGuaUUUUGUGGGuGGUGUCgAG- -5'
5609 3' -51.6 NC_001806.1 + 69416 0.73 0.765946
Target:  5'- gGCGGCGggcguccccgcgcGGACGCCCaccgGCCACGGaCUCg -3'
miRNA:   3'- -CGCCGUau-----------UUUGUGGG----UGGUGUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 144186 0.73 0.771823
Target:  5'- gGCGGCcgcc-GCAgCCGCCGCAGC-Cg -3'
miRNA:   3'- -CGCCGuauuuUGUgGGUGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 108547 0.73 0.781509
Target:  5'- uGCGGCuggccGCGCCCGCCGCuccGCg- -3'
miRNA:   3'- -CGCCGuauuuUGUGGGUGGUGu--CGag -5'
5609 3' -51.6 NC_001806.1 + 113384 0.73 0.79105
Target:  5'- gGCGGCGUuccGGGACGCCCgggGCCugGaGCUg -3'
miRNA:   3'- -CGCCGUA---UUUUGUGGG---UGGugU-CGAg -5'
5609 3' -51.6 NC_001806.1 + 52038 0.72 0.809658
Target:  5'- gGCGGCAgcccgGAGGCGCCCGCgGaaacGUUCg -3'
miRNA:   3'- -CGCCGUa----UUUUGUGGGUGgUgu--CGAG- -5'
5609 3' -51.6 NC_001806.1 + 57170 0.72 0.809658
Target:  5'- uGCGcGCAUAAA--GCCCAgCACGGCg- -3'
miRNA:   3'- -CGC-CGUAUUUugUGGGUgGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 107222 0.72 0.809658
Target:  5'- uCGGCGUAcgacgcaguGGCGCCCAgCGCAGCcCa -3'
miRNA:   3'- cGCCGUAUu--------UUGUGGGUgGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 42601 0.72 0.82757
Target:  5'- aGCGaGCGUAGGgacGCGCCCugaucauacugcGCCGCGGCg- -3'
miRNA:   3'- -CGC-CGUAUUU---UGUGGG------------UGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 46229 0.72 0.82757
Target:  5'- gGCGGCGgAGAcCACCCGCgGCAGgaaaUCg -3'
miRNA:   3'- -CGCCGUaUUUuGUGGGUGgUGUCg---AG- -5'
5609 3' -51.6 NC_001806.1 + 51150 0.72 0.835383
Target:  5'- -gGGC-UGGGAgGCCCGCCACgcccauaAGCUCc -3'
miRNA:   3'- cgCCGuAUUUUgUGGGUGGUG-------UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 100136 0.72 0.836242
Target:  5'- cGCGGCuau-GGCcCCCACCaacGCGGCUa -3'
miRNA:   3'- -CGCCGuauuUUGuGGGUGG---UGUCGAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.