miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 100136 0.72 0.836242
Target:  5'- cGCGGCuau-GGCcCCCACCaacGCGGCUa -3'
miRNA:   3'- -CGCCGuauuUUGuGGGUGG---UGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 14452 0.71 0.844713
Target:  5'- gGCGGCA-AGAACAgCCC-CCACgaGGCUUc -3'
miRNA:   3'- -CGCCGUaUUUUGU-GGGuGGUG--UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 4186 0.71 0.852975
Target:  5'- gGCGGgGgcccGGCGCCgGgCCACGGCUCc -3'
miRNA:   3'- -CGCCgUauu-UUGUGGgU-GGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 131166 0.71 0.852975
Target:  5'- cGUGGgGUuguuGGACGCCCACCACA--UCg -3'
miRNA:   3'- -CGCCgUAu---UUUGUGGGUGGUGUcgAG- -5'
5609 3' -51.6 NC_001806.1 + 4444 0.71 0.860227
Target:  5'- gGCGGCGUccgcccgGGGGCugCCggcGCCGC-GCUCg -3'
miRNA:   3'- -CGCCGUA-------UUUUGugGG---UGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 119859 0.71 0.861021
Target:  5'- cGUGGCGUGGGgcgggcgacGCGCCCGCCcuccGCuGCUg -3'
miRNA:   3'- -CGCCGUAUUU---------UGUGGGUGG----UGuCGAg -5'
5609 3' -51.6 NC_001806.1 + 77395 0.71 0.861021
Target:  5'- cGCGGCGgcc-GCGCCCgcGCCcCuGCUCg -3'
miRNA:   3'- -CGCCGUauuuUGUGGG--UGGuGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 56448 0.71 0.861021
Target:  5'- -gGGCG-GAAGCGCCUGaCACAGCUCc -3'
miRNA:   3'- cgCCGUaUUUUGUGGGUgGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 128229 0.71 0.866521
Target:  5'- cGCGGCGUcggccgugcacaggAAGACGCCCA--ACAGCa- -3'
miRNA:   3'- -CGCCGUA--------------UUUUGUGGGUggUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 88063 0.71 0.876436
Target:  5'- -gGGCGUGGGcAgGCCCcugGCCGCcAGCUCg -3'
miRNA:   3'- cgCCGUAUUU-UgUGGG---UGGUG-UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 51405 0.71 0.876436
Target:  5'- cGCGGCcguGGGCGCCUugCgGCAGCg- -3'
miRNA:   3'- -CGCCGuauUUUGUGGGugG-UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 23361 0.7 0.883793
Target:  5'- aGCGGCGc-GGACGCCC-CC--GGCUCg -3'
miRNA:   3'- -CGCCGUauUUUGUGGGuGGugUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 4267 0.7 0.883793
Target:  5'- uCGGCGUccAGCucgACCCGCCGgGGCUg -3'
miRNA:   3'- cGCCGUAuuUUG---UGGGUGGUgUCGAg -5'
5609 3' -51.6 NC_001806.1 + 113417 0.7 0.890908
Target:  5'- -gGGgGUGGGACGCCaCGCCAUGGCc- -3'
miRNA:   3'- cgCCgUAUUUUGUGG-GUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 91200 0.7 0.890908
Target:  5'- cGgGGCGUAccuGGCGCgCGCCGCGGgaCUCg -3'
miRNA:   3'- -CgCCGUAUu--UUGUGgGUGGUGUC--GAG- -5'
5609 3' -51.6 NC_001806.1 + 152013 0.7 0.893686
Target:  5'- cGCGGCcccgccccccACGCCCGCCGCGcGCg- -3'
miRNA:   3'- -CGCCGuauuu-----UGUGGGUGGUGU-CGag -5'
5609 3' -51.6 NC_001806.1 + 303 0.7 0.893686
Target:  5'- cGCGGCcccgccccccACGCCCGCCGCGcGCg- -3'
miRNA:   3'- -CGCCGuauuu-----UGUGGGUGGUGU-CGag -5'
5609 3' -51.6 NC_001806.1 + 1811 0.7 0.897778
Target:  5'- cGCGGUAgc--GCACguugCCGCCGCGGCa- -3'
miRNA:   3'- -CGCCGUauuuUGUG----GGUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 50682 0.7 0.904398
Target:  5'- cGCGGCGgcc-ACGCgCGCCAUucuggccgccgGGCUCg -3'
miRNA:   3'- -CGCCGUauuuUGUGgGUGGUG-----------UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 82519 0.7 0.904398
Target:  5'- cCGGUGUAGGGCuugcccaguCCCGCCAUGGCg- -3'
miRNA:   3'- cGCCGUAUUUUGu--------GGGUGGUGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.