Results 21 - 40 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5609 | 3' | -51.6 | NC_001806.1 | + | 79480 | 0.66 | 0.986569 |
Target: 5'- cGCGGCccccuGgGCCgGCaguCACGGCUCg -3' miRNA: 3'- -CGCCGuauuuUgUGGgUG---GUGUCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 16480 | 0.66 | 0.988165 |
Target: 5'- aUGGUcgAGGGgggcUugCCGCCGCGGCUg -3' miRNA: 3'- cGCCGuaUUUU----GugGGUGGUGUCGAg -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 84847 | 0.66 | 0.988165 |
Target: 5'- aCGGCAaGGAGCGCCgGCgGuCGcGCUCc -3' miRNA: 3'- cGCCGUaUUUUGUGGgUGgU-GU-CGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 64754 | 0.66 | 0.988165 |
Target: 5'- aCGGCAUcucccAGAAaGCgCGCCACGGcCUCc -3' miRNA: 3'- cGCCGUA-----UUUUgUGgGUGGUGUC-GAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 87671 | 0.66 | 0.984627 |
Target: 5'- gGCGGCGUAGuAgGCggggaugUCGCgAUAGCUCa -3' miRNA: 3'- -CGCCGUAUUuUgUG-------GGUGgUGUCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 97608 | 0.66 | 0.986569 |
Target: 5'- uCGGCA-AGGACGCCCGCgAC-GC-Ca -3' miRNA: 3'- cGCCGUaUUUUGUGGGUGgUGuCGaG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 148582 | 0.66 | 0.982886 |
Target: 5'- -gGGCGUc--ACGCCCACUAucagguacacCAGCUUg -3' miRNA: 3'- cgCCGUAuuuUGUGGGUGGU----------GUCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 24026 | 0.66 | 0.982886 |
Target: 5'- uGCgGGCcgGAcACGgCCGCCugGGCg- -3' miRNA: 3'- -CG-CCGuaUUuUGUgGGUGGugUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 23459 | 0.66 | 0.988165 |
Target: 5'- cGCGGCGccccg-GgCCGCCGCGGCg- -3' miRNA: 3'- -CGCCGUauuuugUgGGUGGUGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 128521 | 0.66 | 0.98078 |
Target: 5'- uGCGGCAUGGccAUGCggGCCGCAGC-Ca -3' miRNA: 3'- -CGCCGUAUUu-UGUGggUGGUGUCGaG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 68281 | 0.66 | 0.988165 |
Target: 5'- aCGGCcaagcuGCGCgCCGCCAUGGCg- -3' miRNA: 3'- cGCCGuauuu-UGUG-GGUGGUGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 113093 | 0.66 | 0.986569 |
Target: 5'- gGCGGCcccggccGGC-CCCGCCGCAGaCa- -3' miRNA: 3'- -CGCCGuauu---UUGuGGGUGGUGUC-Gag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 64479 | 0.66 | 0.98078 |
Target: 5'- uGCGGUA-AAGGCgagcggaccgGCUCACCAgCGGCUUg -3' miRNA: 3'- -CGCCGUaUUUUG----------UGGGUGGU-GUCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 32312 | 0.66 | 0.988165 |
Target: 5'- cCGGUcccccGGCACCCGCCACucCUCc -3' miRNA: 3'- cGCCGuauu-UUGUGGGUGGUGucGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 90843 | 0.67 | 0.973305 |
Target: 5'- gGCGGuCGUGGG--ACCCGCCGCcguGGCa- -3' miRNA: 3'- -CGCC-GUAUUUugUGGGUGGUG---UCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 12209 | 0.67 | 0.975998 |
Target: 5'- -gGGCAUuuguguCCCaugggguaguGCCACAGCUCu -3' miRNA: 3'- cgCCGUAuuuuguGGG----------UGGUGUCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 20195 | 0.67 | 0.973305 |
Target: 5'- cGCGGaGUcgGGCACggCGCCAguGCUCg -3' miRNA: 3'- -CGCCgUAuuUUGUGg-GUGGUguCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 88938 | 0.67 | 0.973305 |
Target: 5'- gGUGGgGUuGAAC-CCCGCCGgGGCg- -3' miRNA: 3'- -CGCCgUAuUUUGuGGGUGGUgUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 2346 | 0.67 | 0.975998 |
Target: 5'- aGCGGCgaGUAcAGCA-CCACCACGcGCa- -3' miRNA: 3'- -CGCCG--UAUuUUGUgGGUGGUGU-CGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 2301 | 0.67 | 0.975998 |
Target: 5'- gGCGGCccccccGAGGC-CCCGCCGcCGGC-Ca -3' miRNA: 3'- -CGCCGua----UUUUGuGGGUGGU-GUCGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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