Results 21 - 40 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5609 | 3' | -51.6 | NC_001806.1 | + | 52038 | 0.72 | 0.809658 |
Target: 5'- gGCGGCAgcccgGAGGCGCCCGCgGaaacGUUCg -3' miRNA: 3'- -CGCCGUa----UUUUGUGGGUGgUgu--CGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 88063 | 0.71 | 0.876436 |
Target: 5'- -gGGCGUGGGcAgGCCCcugGCCGCcAGCUCg -3' miRNA: 3'- cgCCGUAUUU-UgUGGG---UGGUG-UCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 51405 | 0.71 | 0.876436 |
Target: 5'- cGCGGCcguGGGCGCCUugCgGCAGCg- -3' miRNA: 3'- -CGCCGuauUUUGUGGGugG-UGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 128229 | 0.71 | 0.866521 |
Target: 5'- cGCGGCGUcggccgugcacaggAAGACGCCCA--ACAGCa- -3' miRNA: 3'- -CGCCGUA--------------UUUUGUGGGUggUGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 119859 | 0.71 | 0.861021 |
Target: 5'- cGUGGCGUGGGgcgggcgacGCGCCCGCCcuccGCuGCUg -3' miRNA: 3'- -CGCCGUAUUU---------UGUGGGUGG----UGuCGAg -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 77395 | 0.71 | 0.861021 |
Target: 5'- cGCGGCGgcc-GCGCCCgcGCCcCuGCUCg -3' miRNA: 3'- -CGCCGUauuuUGUGGG--UGGuGuCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 56448 | 0.71 | 0.861021 |
Target: 5'- -gGGCG-GAAGCGCCUGaCACAGCUCc -3' miRNA: 3'- cgCCGUaUUUUGUGGGUgGUGUCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 4444 | 0.71 | 0.860227 |
Target: 5'- gGCGGCGUccgcccgGGGGCugCCggcGCCGC-GCUCg -3' miRNA: 3'- -CGCCGUA-------UUUUGugGG---UGGUGuCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 131166 | 0.71 | 0.852975 |
Target: 5'- cGUGGgGUuguuGGACGCCCACCACA--UCg -3' miRNA: 3'- -CGCCgUAu---UUUGUGGGUGGUGUcgAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 4186 | 0.71 | 0.852975 |
Target: 5'- gGCGGgGgcccGGCGCCgGgCCACGGCUCc -3' miRNA: 3'- -CGCCgUauu-UUGUGGgU-GGUGUCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 14452 | 0.71 | 0.844713 |
Target: 5'- gGCGGCA-AGAACAgCCC-CCACgaGGCUUc -3' miRNA: 3'- -CGCCGUaUUUUGU-GGGuGGUG--UCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 82519 | 0.7 | 0.904398 |
Target: 5'- cCGGUGUAGGGCuugcccaguCCCGCCAUGGCg- -3' miRNA: 3'- cGCCGUAUUUUGu--------GGGUGGUGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 50682 | 0.7 | 0.904398 |
Target: 5'- cGCGGCGgcc-ACGCgCGCCAUucuggccgccgGGCUCg -3' miRNA: 3'- -CGCCGUauuuUGUGgGUGGUG-----------UCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 1811 | 0.7 | 0.897778 |
Target: 5'- cGCGGUAgc--GCACguugCCGCCGCGGCa- -3' miRNA: 3'- -CGCCGUauuuUGUG----GGUGGUGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 152013 | 0.7 | 0.893686 |
Target: 5'- cGCGGCcccgccccccACGCCCGCCGCGcGCg- -3' miRNA: 3'- -CGCCGuauuu-----UGUGGGUGGUGU-CGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 303 | 0.7 | 0.893686 |
Target: 5'- cGCGGCcccgccccccACGCCCGCCGCGcGCg- -3' miRNA: 3'- -CGCCGuauuu-----UGUGGGUGGUGU-CGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 91200 | 0.7 | 0.890908 |
Target: 5'- cGgGGCGUAccuGGCGCgCGCCGCGGgaCUCg -3' miRNA: 3'- -CgCCGUAUu--UUGUGgGUGGUGUC--GAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 113417 | 0.7 | 0.890908 |
Target: 5'- -gGGgGUGGGACGCCaCGCCAUGGCc- -3' miRNA: 3'- cgCCgUAUUUUGUGG-GUGGUGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 4267 | 0.7 | 0.883793 |
Target: 5'- uCGGCGUccAGCucgACCCGCCGgGGCUg -3' miRNA: 3'- cGCCGUAuuUUG---UGGGUGGUgUCGAg -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 130139 | 0.7 | 0.910764 |
Target: 5'- uGCGGCc--AGugGCCCGC-GCAGUUCu -3' miRNA: 3'- -CGCCGuauUUugUGGGUGgUGUCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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