miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 130139 0.7 0.910764
Target:  5'- uGCGGCc--AGugGCCCGC-GCAGUUCu -3'
miRNA:   3'- -CGCCGuauUUugUGGGUGgUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 146181 0.7 0.910764
Target:  5'- gGUGGUc--AGGCAgCCCggGCCGCGGCUCu -3'
miRNA:   3'- -CGCCGuauUUUGU-GGG--UGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 21286 0.7 0.910764
Target:  5'- cCGGCGggacgGGAGgGCCC-CCGCGGCg- -3'
miRNA:   3'- cGCCGUa----UUUUgUGGGuGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 135548 0.69 0.916875
Target:  5'- gGCGGCugcc-GCAUCCACCggucACGGaCUCg -3'
miRNA:   3'- -CGCCGuauuuUGUGGGUGG----UGUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 56490 0.69 0.916875
Target:  5'- aUGGCcuccgaGAAACACCUgggGCCACAGCg- -3'
miRNA:   3'- cGCCGua----UUUUGUGGG---UGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 105721 0.69 0.916875
Target:  5'- gGCGGCA---AGC-CCUGCCAUAGC-Ca -3'
miRNA:   3'- -CGCCGUauuUUGuGGGUGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 148131 0.69 0.922155
Target:  5'- gGCuGCGUGAGACGCCCcGCCcgucacggggggcGCGGCg- -3'
miRNA:   3'- -CGcCGUAUUUUGUGGG-UGG-------------UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 94703 0.69 0.922728
Target:  5'- uGCGGCu--GGACGCCaacgaGCUGCGGCg- -3'
miRNA:   3'- -CGCCGuauUUUGUGGg----UGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 73974 0.69 0.922728
Target:  5'- uCGGCGUA--AUGCCCGCCcCGGC-Cg -3'
miRNA:   3'- cGCCGUAUuuUGUGGGUGGuGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 22383 0.69 0.922728
Target:  5'- cGUGGCGcGGGccguGC-CCCACCugGGCUa -3'
miRNA:   3'- -CGCCGUaUUU----UGuGGGUGGugUCGAg -5'
5609 3' -51.6 NC_001806.1 + 72387 0.69 0.922728
Target:  5'- cGCGGCuccugcGGACuugaCgGCCGCGGCUCu -3'
miRNA:   3'- -CGCCGuau---UUUGug--GgUGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 46151 0.69 0.922728
Target:  5'- aGgGGCcgGAcgcACACCCACCACcGCc- -3'
miRNA:   3'- -CgCCGuaUUu--UGUGGGUGGUGuCGag -5'
5609 3' -51.6 NC_001806.1 + 80296 0.69 0.926117
Target:  5'- aCGGCAgccgguggccACGCCCACCACAuCUg -3'
miRNA:   3'- cGCCGUauuu------UGUGGGUGGUGUcGAg -5'
5609 3' -51.6 NC_001806.1 + 139371 0.69 0.928324
Target:  5'- aUGGCcauAAACGCCgACUACGGCaUCa -3'
miRNA:   3'- cGCCGuauUUUGUGGgUGGUGUCG-AG- -5'
5609 3' -51.6 NC_001806.1 + 85456 0.69 0.928324
Target:  5'- cCGGCAcguc-CGCCCACCugcacuacCGGCUCa -3'
miRNA:   3'- cGCCGUauuuuGUGGGUGGu-------GUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 11858 0.69 0.928324
Target:  5'- gGCGGguUGGuauACGCUCGCCGgGGC-Ca -3'
miRNA:   3'- -CGCCguAUUu--UGUGGGUGGUgUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 100267 0.69 0.928324
Target:  5'- -aGGCcacGGAC-CCCGCCGCAGC-Cg -3'
miRNA:   3'- cgCCGuauUUUGuGGGUGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 3225 0.69 0.932086
Target:  5'- cGCGcaggcGCAUGAGcaccagcgcgucgcGCACgaACCGCAGCUCg -3'
miRNA:   3'- -CGC-----CGUAUUU--------------UGUGggUGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 113524 0.69 0.93366
Target:  5'- aCGGCAgcGAgcacgucuucuGCGCCCugGCC-CGGCUCg -3'
miRNA:   3'- cGCCGUauUU-----------UGUGGG--UGGuGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 4044 0.69 0.93366
Target:  5'- cGCGGCGUcgcccagcucGGGCGCCCA-CACGGC-Cg -3'
miRNA:   3'- -CGCCGUAu---------UUUGUGGGUgGUGUCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.