miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 152013 0.7 0.893686
Target:  5'- cGCGGCcccgccccccACGCCCGCCGCGcGCg- -3'
miRNA:   3'- -CGCCGuauuu-----UGUGGGUGGUGU-CGag -5'
5609 3' -51.6 NC_001806.1 + 148582 0.66 0.982886
Target:  5'- -gGGCGUc--ACGCCCACUAucagguacacCAGCUUg -3'
miRNA:   3'- cgCCGUAuuuUGUGGGUGGU----------GUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 148131 0.69 0.922155
Target:  5'- gGCuGCGUGAGACGCCCcGCCcgucacggggggcGCGGCg- -3'
miRNA:   3'- -CGcCGUAUUUUGUGGG-UGG-------------UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 147983 0.75 0.690349
Target:  5'- aGgGGCc--AGACGCCCcccgcggcGCCGCGGCUCg -3'
miRNA:   3'- -CgCCGuauUUUGUGGG--------UGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 147214 0.67 0.978487
Target:  5'- gGCGGCGgaaGAGGCgGCCC-CCGCGGg-- -3'
miRNA:   3'- -CGCCGUa--UUUUG-UGGGuGGUGUCgag -5'
5609 3' -51.6 NC_001806.1 + 146181 0.7 0.910764
Target:  5'- gGUGGUc--AGGCAgCCCggGCCGCGGCUCu -3'
miRNA:   3'- -CGCCGuauUUUGU-GGG--UGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 144186 0.73 0.771823
Target:  5'- gGCGGCcgcc-GCAgCCGCCGCAGC-Cg -3'
miRNA:   3'- -CGCCGuauuuUGUgGGUGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 140027 0.8 0.424493
Target:  5'- cGCGGCG-AAAGCGCCCggagcGCCACGGC-Cg -3'
miRNA:   3'- -CGCCGUaUUUUGUGGG-----UGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 139371 0.69 0.928324
Target:  5'- aUGGCcauAAACGCCgACUACGGCaUCa -3'
miRNA:   3'- cGCCGuauUUUGUGGgUGGUGUCG-AG- -5'
5609 3' -51.6 NC_001806.1 + 137654 0.68 0.960335
Target:  5'- uUGGCcgAGGGCGCCCugaCGCGGUUg -3'
miRNA:   3'- cGCCGuaUUUUGUGGGug-GUGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 136753 0.68 0.952443
Target:  5'- gGUGGCGUugaGGAGCGCgugaaagaucgCCGCCuGCAGCUg -3'
miRNA:   3'- -CGCCGUA---UUUUGUG-----------GGUGG-UGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 135548 0.69 0.916875
Target:  5'- gGCGGCugcc-GCAUCCACCggucACGGaCUCg -3'
miRNA:   3'- -CGCCGuauuuUGUGGGUGG----UGUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 134175 0.66 0.984812
Target:  5'- cGCGcGCAccuccuccGACGCCCA--GCAGCUCc -3'
miRNA:   3'- -CGC-CGUauu-----UUGUGGGUggUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 132363 0.69 0.938242
Target:  5'- uGCGGCcacgcGGGCACCCGCaacgaguCACGGCa- -3'
miRNA:   3'- -CGCCGuau--UUUGUGGGUG-------GUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 132199 0.68 0.952443
Target:  5'- gGCGGcCAUucgcGACACCCcCCAguGCg- -3'
miRNA:   3'- -CGCC-GUAuu--UUGUGGGuGGUguCGag -5'
5609 3' -51.6 NC_001806.1 + 132067 0.68 0.952443
Target:  5'- aGCGuCGUGGGGCccGCCCGCCGCccCUCg -3'
miRNA:   3'- -CGCcGUAUUUUG--UGGGUGGUGucGAG- -5'
5609 3' -51.6 NC_001806.1 + 131711 0.67 0.967273
Target:  5'- cGCGGUAUGGcuGCcCCC-CCGC-GCUCc -3'
miRNA:   3'- -CGCCGUAUUu-UGuGGGuGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 131166 0.71 0.852975
Target:  5'- cGUGGgGUuguuGGACGCCCACCACA--UCg -3'
miRNA:   3'- -CGCCgUAu---UUUGUGGGUGGUGUcgAG- -5'
5609 3' -51.6 NC_001806.1 + 130139 0.7 0.910764
Target:  5'- uGCGGCc--AGugGCCCGC-GCAGUUCu -3'
miRNA:   3'- -CGCCGuauUUugUGGGUGgUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 128570 0.74 0.711236
Target:  5'- cGCGGuCGUAGcgggaggucacGGCGCCgACCACGGCa- -3'
miRNA:   3'- -CGCC-GUAUU-----------UUGUGGgUGGUGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.