miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 128521 0.66 0.98078
Target:  5'- uGCGGCAUGGccAUGCggGCCGCAGC-Ca -3'
miRNA:   3'- -CGCCGUAUUu-UGUGggUGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 128229 0.71 0.866521
Target:  5'- cGCGGCGUcggccgugcacaggAAGACGCCCA--ACAGCa- -3'
miRNA:   3'- -CGCCGUA--------------UUUUGUGGGUggUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 126140 0.68 0.948128
Target:  5'- gGCGGCGaGGccGGCGCCgACaCGCGGCg- -3'
miRNA:   3'- -CGCCGUaUU--UUGUGGgUG-GUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 125208 0.67 0.973305
Target:  5'- gGCGGC-----GCGCUCaACCACcGCUCc -3'
miRNA:   3'- -CGCCGuauuuUGUGGG-UGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 124961 0.66 0.984812
Target:  5'- uCGGCcgAGAccaACACCCACgGCcuGGCg- -3'
miRNA:   3'- cGCCGuaUUU---UGUGGGUGgUG--UCGag -5'
5609 3' -51.6 NC_001806.1 + 124627 0.69 0.938739
Target:  5'- uUGGCAUGcccacCGCCCuaACCACAGC-Ca -3'
miRNA:   3'- cGCCGUAUuuu--GUGGG--UGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 124237 0.67 0.978487
Target:  5'- cCGGCc----GCACCCAcaacauCCGCGGCUUc -3'
miRNA:   3'- cGCCGuauuuUGUGGGU------GGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 123899 0.66 0.98078
Target:  5'- cCGcGCGUcccccGAGACGCCCGgUACGGCg- -3'
miRNA:   3'- cGC-CGUA-----UUUUGUGGGUgGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 119859 0.71 0.861021
Target:  5'- cGUGGCGUGGGgcgggcgacGCGCCCGCCcuccGCuGCUg -3'
miRNA:   3'- -CGCCGUAUUU---------UGUGGGUGG----UGuCGAg -5'
5609 3' -51.6 NC_001806.1 + 119032 0.68 0.956511
Target:  5'- gGCGGCGcu--GCGCCUugCGuggGGCUCg -3'
miRNA:   3'- -CGCCGUauuuUGUGGGugGUg--UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 114658 0.66 0.98078
Target:  5'- cGCGGCcgGGGagaacGCGCUgACCuACGcGCUCa -3'
miRNA:   3'- -CGCCGuaUUU-----UGUGGgUGG-UGU-CGAG- -5'
5609 3' -51.6 NC_001806.1 + 114268 0.72 0.836242
Target:  5'- cGUGGUAguGGACggGCCCGCCAU-GCUCa -3'
miRNA:   3'- -CGCCGUauUUUG--UGGGUGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 113524 0.69 0.93366
Target:  5'- aCGGCAgcGAgcacgucuucuGCGCCCugGCC-CGGCUCg -3'
miRNA:   3'- cGCCGUauUU-----------UGUGGG--UGGuGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 113417 0.7 0.890908
Target:  5'- -gGGgGUGGGACGCCaCGCCAUGGCc- -3'
miRNA:   3'- cgCCgUAUUUUGUGG-GUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 113384 0.73 0.79105
Target:  5'- gGCGGCGUuccGGGACGCCCgggGCCugGaGCUg -3'
miRNA:   3'- -CGCCGUA---UUUUGUGGG---UGGugU-CGAg -5'
5609 3' -51.6 NC_001806.1 + 113093 0.66 0.986569
Target:  5'- gGCGGCcccggccGGC-CCCGCCGCAGaCa- -3'
miRNA:   3'- -CGCCGuauu---UUGuGGGUGGUGUC-Gag -5'
5609 3' -51.6 NC_001806.1 + 112081 0.67 0.975998
Target:  5'- gGCGcGCAUcgccaGuuGCGCgCCAUCcaACAGCUCg -3'
miRNA:   3'- -CGC-CGUA-----UuuUGUG-GGUGG--UGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 109198 1.11 0.004933
Target:  5'- uGCGGCAUAAAACACCCACCACAGCUCc -3'
miRNA:   3'- -CGCCGUAUUUUGUGGGUGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 108656 0.67 0.973305
Target:  5'- uGCGGaCAU---GCGCCCGCgGcCAGCg- -3'
miRNA:   3'- -CGCC-GUAuuuUGUGGGUGgU-GUCGag -5'
5609 3' -51.6 NC_001806.1 + 108590 0.66 0.98078
Target:  5'- aCGGUccacguCACCCACCGCuAGCa- -3'
miRNA:   3'- cGCCGuauuuuGUGGGUGGUG-UCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.