Results 21 - 40 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5610 | 3' | -67.9 | NC_001806.1 | + | 35553 | 0.66 | 0.364206 |
Target: 5'- aGCcGCUcGG-CGCGCCCggcGCCGCgCCGa -3' miRNA: 3'- aCGcCGA-CCgGCGCGGG---CGGCGaGGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 26556 | 0.66 | 0.402659 |
Target: 5'- cGCuGCU-GCUGCGCCaGUgGCUCCa -3' miRNA: 3'- aCGcCGAcCGGCGCGGgCGgCGAGGc -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 74185 | 0.66 | 0.37169 |
Target: 5'- cGUGGCUucGGCCGCcgucguGCCCGUgG-UCCa -3' miRNA: 3'- aCGCCGA--CCGGCG------CGGGCGgCgAGGc -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 99483 | 0.66 | 0.37169 |
Target: 5'- gGCGGCgcgGGCCGUGUCaacguccacgugUGCUGCgcugCUGg -3' miRNA: 3'- aCGCCGa--CCGGCGCGG------------GCGGCGa---GGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 78925 | 0.66 | 0.37169 |
Target: 5'- aGCGGCcccucGCCcgGgGCCCGCCGUgUCUGg -3' miRNA: 3'- aCGCCGac---CGG--CgCGGGCGGCG-AGGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 24907 | 0.66 | 0.386971 |
Target: 5'- gGCgGGCuUGGCCaCGCCC-CCGCggCGg -3' miRNA: 3'- aCG-CCG-ACCGGcGCGGGcGGCGagGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 5011 | 0.66 | 0.364206 |
Target: 5'- cGUGGUcggGGUCGUcCCCGCC-CUCCu -3' miRNA: 3'- aCGCCGa--CCGGCGcGGGCGGcGAGGc -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 2213 | 0.66 | 0.379279 |
Target: 5'- cGCccaGGC-GGCCGUGUCCGgcCCGCacagCCGg -3' miRNA: 3'- aCG---CCGaCCGGCGCGGGC--GGCGa---GGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 70485 | 0.66 | 0.386971 |
Target: 5'- aUGCGG-UGGUCGgggacaCGCCCGaCCGC-CUGg -3' miRNA: 3'- -ACGCCgACCGGC------GCGGGC-GGCGaGGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 114268 | 0.66 | 0.364206 |
Target: 5'- cGUGGUagUGGaCGgGCCCGCCauGCUCaCGc -3' miRNA: 3'- aCGCCG--ACCgGCgCGGGCGG--CGAG-GC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 2546 | 0.66 | 0.379279 |
Target: 5'- cGCGGCgaucgaGGCCaGgGCCCGCgGgUCa- -3' miRNA: 3'- aCGCCGa-----CCGG-CgCGGGCGgCgAGgc -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 1704 | 0.66 | 0.37169 |
Target: 5'- gGUGGUccccgaGGCCGcCGCCCGgCCGUccagcgCCGg -3' miRNA: 3'- aCGCCGa-----CCGGC-GCGGGC-GGCGa-----GGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 78887 | 0.66 | 0.364206 |
Target: 5'- gGCGGCacagcucCCGCGCCUGuCCGCgcucaucgCCGa -3' miRNA: 3'- aCGCCGacc----GGCGCGGGC-GGCGa-------GGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 147519 | 0.67 | 0.321523 |
Target: 5'- cGCGGgaGGgcCCGUGCCCaCC-CUCCa -3' miRNA: 3'- aCGCCgaCC--GGCGCGGGcGGcGAGGc -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 136366 | 0.67 | 0.356826 |
Target: 5'- cGgGGCcGG-CGCGCuCCGCgGcCUCCGc -3' miRNA: 3'- aCgCCGaCCgGCGCG-GGCGgC-GAGGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 3181 | 0.67 | 0.32837 |
Target: 5'- gGCGGCcacGGCgGC-CUCGCUGCcgCCGg -3' miRNA: 3'- aCGCCGa--CCGgCGcGGGCGGCGa-GGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 148000 | 0.67 | 0.32837 |
Target: 5'- cGCGGCgccgcGGCuCGCGacuggcgggagCCGCCGCcgCCGc -3' miRNA: 3'- aCGCCGa----CCG-GCGCg----------GGCGGCGa-GGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 37761 | 0.67 | 0.32837 |
Target: 5'- gUGuCGGC-GGCgGgCGCCUuUCGCUCCGg -3' miRNA: 3'- -AC-GCCGaCCGgC-GCGGGcGGCGAGGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 27042 | 0.67 | 0.32837 |
Target: 5'- gGCGGUcaucgGGCCGUGCCUGggGC-CCGa -3' miRNA: 3'- aCGCCGa----CCGGCGCGGGCggCGaGGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 66831 | 0.67 | 0.32837 |
Target: 5'- -cCGGgUGGCCgGUGUgCGCCGcCUCCu -3' miRNA: 3'- acGCCgACCGG-CGCGgGCGGC-GAGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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