miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5610 3' -67.9 NC_001806.1 + 24705 0.65 0.408245
Target:  5'- gGUGGCgcgGGCCgcggagggacuuuuGCGCCCG-CGC-CCu -3'
miRNA:   3'- aCGCCGa--CCGG--------------CGCGGGCgGCGaGGc -5'
5610 3' -67.9 NC_001806.1 + 84823 0.66 0.374713
Target:  5'- cGCGGCUccggcccgGGCCcuaucacggcaaggaGCGCCgGCggucgCGCUCCu -3'
miRNA:   3'- aCGCCGA--------CCGG---------------CGCGGgCG-----GCGAGGc -5'
5610 3' -67.9 NC_001806.1 + 140678 0.66 0.386971
Target:  5'- uUGuuGCUGcGCgGCGCCCgcguGCCGCgCUGg -3'
miRNA:   3'- -ACgcCGAC-CGgCGCGGG----CGGCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 35553 0.66 0.364206
Target:  5'- aGCcGCUcGG-CGCGCCCggcGCCGCgCCGa -3'
miRNA:   3'- aCGcCGA-CCgGCGCGGG---CGGCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 67787 0.66 0.37169
Target:  5'- uUGU-GUUGGCCGacugGCCCGgCGCgUCCGu -3'
miRNA:   3'- -ACGcCGACCGGCg---CGGGCgGCG-AGGC- -5'
5610 3' -67.9 NC_001806.1 + 5011 0.66 0.364206
Target:  5'- cGUGGUcggGGUCGUcCCCGCC-CUCCu -3'
miRNA:   3'- aCGCCGa--CCGGCGcGGGCGGcGAGGc -5'
5610 3' -67.9 NC_001806.1 + 1704 0.66 0.37169
Target:  5'- gGUGGUccccgaGGCCGcCGCCCGgCCGUccagcgCCGg -3'
miRNA:   3'- aCGCCGa-----CCGGC-GCGGGC-GGCGa-----GGC- -5'
5610 3' -67.9 NC_001806.1 + 1408 0.66 0.379279
Target:  5'- cUGCGGCccgUGGCCGagGCCCagcgaaucccggGCgGCgCCGg -3'
miRNA:   3'- -ACGCCG---ACCGGCg-CGGG------------CGgCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 1936 0.66 0.386971
Target:  5'- gUGCGGCgcaGGUCcCGCgCCGCCGg-CCa -3'
miRNA:   3'- -ACGCCGa--CCGGcGCG-GGCGGCgaGGc -5'
5610 3' -67.9 NC_001806.1 + 22773 0.66 0.37169
Target:  5'- cGCcgGGC--GCCGCGCCCaggccgGCCGCguggCCGu -3'
miRNA:   3'- aCG--CCGacCGGCGCGGG------CGGCGa---GGC- -5'
5610 3' -67.9 NC_001806.1 + 78925 0.66 0.37169
Target:  5'- aGCGGCcccucGCCcgGgGCCCGCCGUgUCUGg -3'
miRNA:   3'- aCGCCGac---CGG--CgCGGGCGGCG-AGGC- -5'
5610 3' -67.9 NC_001806.1 + 96506 0.66 0.378515
Target:  5'- gGCGGCgaacgggGGCCcUGCCacuccggCGCCGC-CCGc -3'
miRNA:   3'- aCGCCGa------CCGGcGCGG-------GCGGCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 24907 0.66 0.386971
Target:  5'- gGCgGGCuUGGCCaCGCCC-CCGCggCGg -3'
miRNA:   3'- aCG-CCG-ACCGGcGCGGGcGGCGagGC- -5'
5610 3' -67.9 NC_001806.1 + 74185 0.66 0.37169
Target:  5'- cGUGGCUucGGCCGCcgucguGCCCGUgG-UCCa -3'
miRNA:   3'- aCGCCGA--CCGGCG------CGGGCGgCgAGGc -5'
5610 3' -67.9 NC_001806.1 + 30454 0.66 0.378515
Target:  5'- cGCGGCgccGCCcccuccgGCGCCgCcCCGCUCCc -3'
miRNA:   3'- aCGCCGac-CGG-------CGCGG-GcGGCGAGGc -5'
5610 3' -67.9 NC_001806.1 + 78887 0.66 0.364206
Target:  5'- gGCGGCacagcucCCGCGCCUGuCCGCgcucaucgCCGa -3'
miRNA:   3'- aCGCCGacc----GGCGCGGGC-GGCGa-------GGC- -5'
5610 3' -67.9 NC_001806.1 + 114268 0.66 0.364206
Target:  5'- cGUGGUagUGGaCGgGCCCGCCauGCUCaCGc -3'
miRNA:   3'- aCGCCG--ACCgGCgCGGGCGG--CGAG-GC- -5'
5610 3' -67.9 NC_001806.1 + 65460 0.66 0.37169
Target:  5'- cGCGGCccccgGGUCcuggggGCGCCCGCgcaccaCGuCUCCGu -3'
miRNA:   3'- aCGCCGa----CCGG------CGCGGGCG------GC-GAGGC- -5'
5610 3' -67.9 NC_001806.1 + 99483 0.66 0.37169
Target:  5'- gGCGGCgcgGGCCGUGUCaacguccacgugUGCUGCgcugCUGg -3'
miRNA:   3'- aCGCCGa--CCGGCGCGG------------GCGGCGa---GGC- -5'
5610 3' -67.9 NC_001806.1 + 2213 0.66 0.379279
Target:  5'- cGCccaGGC-GGCCGUGUCCGgcCCGCacagCCGg -3'
miRNA:   3'- aCG---CCGaCCGGCGCGGGC--GGCGa---GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.