Results 1 - 20 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5610 | 3' | -67.9 | NC_001806.1 | + | 24705 | 0.65 | 0.408245 |
Target: 5'- gGUGGCgcgGGCCgcggagggacuuuuGCGCCCG-CGC-CCu -3' miRNA: 3'- aCGCCGa--CCGG--------------CGCGGGCgGCGaGGc -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 20733 | 0.73 | 0.138661 |
Target: 5'- gGCGGggGGCCgGCGgccUCCGCUGCUCCu -3' miRNA: 3'- aCGCCgaCCGG-CGC---GGGCGGCGAGGc -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 2663 | 0.73 | 0.142016 |
Target: 5'- gGCGGC-GGCCGCggGCgCCGCCGUguggCUGg -3' miRNA: 3'- aCGCCGaCCGGCG--CG-GGCGGCGa---GGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 34400 | 0.73 | 0.142016 |
Target: 5'- gGCGGCggUGGCCGgGCCgGgCCGggCCGg -3' miRNA: 3'- aCGCCG--ACCGGCgCGGgC-GGCgaGGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 77961 | 0.73 | 0.142016 |
Target: 5'- cGCGGC-GGCCccGgGgCCGCCGCUCgGa -3' miRNA: 3'- aCGCCGaCCGG--CgCgGGCGGCGAGgC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 151302 | 0.72 | 0.145445 |
Target: 5'- gGCGGCggugGGCCGgGCCucuggCGCCgGCUCgGg -3' miRNA: 3'- aCGCCGa---CCGGCgCGG-----GCGG-CGAGgC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 131711 | 0.72 | 0.145445 |
Target: 5'- cGCGGUaUGGCUGCcccCCCG-CGCUCCGa -3' miRNA: 3'- aCGCCG-ACCGGCGc--GGGCgGCGAGGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 100106 | 0.72 | 0.14895 |
Target: 5'- cGCGGCcGGCUGacCGCCCGCCugGCggUCCGc -3' miRNA: 3'- aCGCCGaCCGGC--GCGGGCGG--CG--AGGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 131875 | 0.72 | 0.152531 |
Target: 5'- cGUGGC-GGCCGC-CCgCGCCGCgacgacgCCGg -3' miRNA: 3'- aCGCCGaCCGGCGcGG-GCGGCGa------GGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 3786 | 0.73 | 0.132168 |
Target: 5'- gGCGGCucaUGGCCacgGCGgCCGCCGCgugcgCCa -3' miRNA: 3'- aCGCCG---ACCGG---CGCgGGCGGCGa----GGc -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 56862 | 0.73 | 0.127176 |
Target: 5'- cGCGGCgGGCCcaccgauccaccagaGCGCgCGCUGcCUCCGa -3' miRNA: 3'- aCGCCGaCCGG---------------CGCGgGCGGC-GAGGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 23459 | 0.73 | 0.125956 |
Target: 5'- cGCGGCgccccgGGCCGCcgcggcgcagGCCCGCCcGCgccCCGu -3' miRNA: 3'- aCGCCGa-----CCGGCG----------CGGGCGG-CGa--GGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 77395 | 0.79 | 0.046813 |
Target: 5'- cGCGGC-GGCCGCGCCCGCgccccUGCUCg- -3' miRNA: 3'- aCGCCGaCCGGCGCGGGCG-----GCGAGgc -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 22694 | 0.78 | 0.058689 |
Target: 5'- gGCGGCUGuccGCCGCGCCCGCC--UCCc -3' miRNA: 3'- aCGCCGAC---CGGCGCGGGCGGcgAGGc -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 119865 | 0.77 | 0.069896 |
Target: 5'- gUGgGGCgGGCgaCGCGCCCGCC-CUCCGc -3' miRNA: 3'- -ACgCCGaCCG--GCGCGGGCGGcGAGGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 150659 | 0.77 | 0.069896 |
Target: 5'- cGCuGGUUGGCCGgGcCCCGCCGCgCUGg -3' miRNA: 3'- aCG-CCGACCGGCgC-GGGCGGCGaGGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 78675 | 0.75 | 0.091762 |
Target: 5'- gGCGGCagugcuccUGGgCGCGCCCGUcgucguggCGCUCCGc -3' miRNA: 3'- aCGCCG--------ACCgGCGCGGGCG--------GCGAGGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 56518 | 0.75 | 0.098773 |
Target: 5'- aGCGGCaGGcCCGgGCCCGgCGUUCCc -3' miRNA: 3'- aCGCCGaCC-GGCgCGGGCgGCGAGGc -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 57755 | 0.74 | 0.111592 |
Target: 5'- aGCGGCgggacgGGCCGCcgucccGUCCGCCGCaUCGg -3' miRNA: 3'- aCGCCGa-----CCGGCG------CGGGCGGCGaGGC- -5' |
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5610 | 3' | -67.9 | NC_001806.1 | + | 92099 | 0.74 | 0.114337 |
Target: 5'- cGCGuGCgGGCCGUGCCCcCUGCUUCa -3' miRNA: 3'- aCGC-CGaCCGGCGCGGGcGGCGAGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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