miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5610 3' -67.9 NC_001806.1 + 108546 1.07 0.000394
Target:  5'- gUGCGGCUGGCCGCGCCCGCCGCUCCGc -3'
miRNA:   3'- -ACGCCGACCGGCGCGGGCGGCGAGGC- -5'
5610 3' -67.9 NC_001806.1 + 77395 0.79 0.046813
Target:  5'- cGCGGC-GGCCGCGCCCGCgccccUGCUCg- -3'
miRNA:   3'- aCGCCGaCCGGCGCGGGCG-----GCGAGgc -5'
5610 3' -67.9 NC_001806.1 + 22694 0.78 0.058689
Target:  5'- gGCGGCUGuccGCCGCGCCCGCC--UCCc -3'
miRNA:   3'- aCGCCGAC---CGGCGCGGGCGGcgAGGc -5'
5610 3' -67.9 NC_001806.1 + 119865 0.77 0.069896
Target:  5'- gUGgGGCgGGCgaCGCGCCCGCC-CUCCGc -3'
miRNA:   3'- -ACgCCGaCCG--GCGCGGGCGGcGAGGC- -5'
5610 3' -67.9 NC_001806.1 + 150659 0.77 0.069896
Target:  5'- cGCuGGUUGGCCGgGcCCCGCCGCgCUGg -3'
miRNA:   3'- aCG-CCGACCGGCgC-GGGCGGCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 78675 0.75 0.091762
Target:  5'- gGCGGCagugcuccUGGgCGCGCCCGUcgucguggCGCUCCGc -3'
miRNA:   3'- aCGCCG--------ACCgGCGCGGGCG--------GCGAGGC- -5'
5610 3' -67.9 NC_001806.1 + 56518 0.75 0.098773
Target:  5'- aGCGGCaGGcCCGgGCCCGgCGUUCCc -3'
miRNA:   3'- aCGCCGaCC-GGCgCGGGCgGCGAGGc -5'
5610 3' -67.9 NC_001806.1 + 57755 0.74 0.111592
Target:  5'- aGCGGCgggacgGGCCGCcgucccGUCCGCCGCaUCGg -3'
miRNA:   3'- aCGCCGa-----CCGGCG------CGGGCGGCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 92099 0.74 0.114337
Target:  5'- cGCGuGCgGGCCGUGCCCcCUGCUUCa -3'
miRNA:   3'- aCGC-CGaCCGGCGCGGGcGGCGAGGc -5'
5610 3' -67.9 NC_001806.1 + 23459 0.73 0.125956
Target:  5'- cGCGGCgccccgGGCCGCcgcggcgcagGCCCGCCcGCgccCCGu -3'
miRNA:   3'- aCGCCGa-----CCGGCG----------CGGGCGG-CGa--GGC- -5'
5610 3' -67.9 NC_001806.1 + 56862 0.73 0.127176
Target:  5'- cGCGGCgGGCCcaccgauccaccagaGCGCgCGCUGcCUCCGa -3'
miRNA:   3'- aCGCCGaCCGG---------------CGCGgGCGGC-GAGGC- -5'
5610 3' -67.9 NC_001806.1 + 3786 0.73 0.132168
Target:  5'- gGCGGCucaUGGCCacgGCGgCCGCCGCgugcgCCa -3'
miRNA:   3'- aCGCCG---ACCGG---CGCgGGCGGCGa----GGc -5'
5610 3' -67.9 NC_001806.1 + 20733 0.73 0.138661
Target:  5'- gGCGGggGGCCgGCGgccUCCGCUGCUCCu -3'
miRNA:   3'- aCGCCgaCCGG-CGC---GGGCGGCGAGGc -5'
5610 3' -67.9 NC_001806.1 + 2663 0.73 0.142016
Target:  5'- gGCGGC-GGCCGCggGCgCCGCCGUguggCUGg -3'
miRNA:   3'- aCGCCGaCCGGCG--CG-GGCGGCGa---GGC- -5'
5610 3' -67.9 NC_001806.1 + 34400 0.73 0.142016
Target:  5'- gGCGGCggUGGCCGgGCCgGgCCGggCCGg -3'
miRNA:   3'- aCGCCG--ACCGGCgCGGgC-GGCgaGGC- -5'
5610 3' -67.9 NC_001806.1 + 77961 0.73 0.142016
Target:  5'- cGCGGC-GGCCccGgGgCCGCCGCUCgGa -3'
miRNA:   3'- aCGCCGaCCGG--CgCgGGCGGCGAGgC- -5'
5610 3' -67.9 NC_001806.1 + 131711 0.72 0.145445
Target:  5'- cGCGGUaUGGCUGCcccCCCG-CGCUCCGa -3'
miRNA:   3'- aCGCCG-ACCGGCGc--GGGCgGCGAGGC- -5'
5610 3' -67.9 NC_001806.1 + 151302 0.72 0.145445
Target:  5'- gGCGGCggugGGCCGgGCCucuggCGCCgGCUCgGg -3'
miRNA:   3'- aCGCCGa---CCGGCgCGG-----GCGG-CGAGgC- -5'
5610 3' -67.9 NC_001806.1 + 100106 0.72 0.14895
Target:  5'- cGCGGCcGGCUGacCGCCCGCCugGCggUCCGc -3'
miRNA:   3'- aCGCCGaCCGGC--GCGGGCGG--CG--AGGC- -5'
5610 3' -67.9 NC_001806.1 + 23719 0.72 0.152531
Target:  5'- cGCGGUgcgccgGGcCCGCcCCCGCCGC-CCa -3'
miRNA:   3'- aCGCCGa-----CC-GGCGcGGGCGGCGaGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.