miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5610 3' -67.9 NC_001806.1 + 71 0.72 0.16765
Target:  5'- gGCGuCUGGCCGCuccuCCCcCCGCUCCu -3'
miRNA:   3'- aCGCcGACCGGCGc---GGGcGGCGAGGc -5'
5610 3' -67.9 NC_001806.1 + 303 0.67 0.335324
Target:  5'- cGCGGCcccGCCccccaCGCCCGCCGCgcgcgcgcacgCCGc -3'
miRNA:   3'- aCGCCGac-CGGc----GCGGGCGGCGa----------GGC- -5'
5610 3' -67.9 NC_001806.1 + 1339 0.68 0.295208
Target:  5'- gGgGGCgUGGCCaaGCCCGCC--UCCGc -3'
miRNA:   3'- aCgCCG-ACCGGcgCGGGCGGcgAGGC- -5'
5610 3' -67.9 NC_001806.1 + 1408 0.66 0.379279
Target:  5'- cUGCGGCccgUGGCCGagGCCCagcgaaucccggGCgGCgCCGg -3'
miRNA:   3'- -ACGCCG---ACCGGCg-CGGG------------CGgCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 1546 0.68 0.288897
Target:  5'- cGCGGCccgcgccaccgGGCCGgGCCgGCgCGCaCCGc -3'
miRNA:   3'- aCGCCGa----------CCGGCgCGGgCG-GCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 1704 0.66 0.37169
Target:  5'- gGUGGUccccgaGGCCGcCGCCCGgCCGUccagcgCCGg -3'
miRNA:   3'- aCGCCGa-----CCGGC-GCGGGC-GGCGa-----GGC- -5'
5610 3' -67.9 NC_001806.1 + 1936 0.66 0.386971
Target:  5'- gUGCGGCgcaGGUCcCGCgCCGCCGg-CCa -3'
miRNA:   3'- -ACGCCGa--CCGGcGCG-GGCGGCgaGGc -5'
5610 3' -67.9 NC_001806.1 + 2213 0.66 0.379279
Target:  5'- cGCccaGGC-GGCCGUGUCCGgcCCGCacagCCGg -3'
miRNA:   3'- aCG---CCGaCCGGCGCGGGC--GGCGa---GGC- -5'
5610 3' -67.9 NC_001806.1 + 2247 0.69 0.24989
Target:  5'- -uUGGCcagGGCCGCcagcaggcaggacaGCCCGCCGCgcucggcggaccacUCCGg -3'
miRNA:   3'- acGCCGa--CCGGCG--------------CGGGCGGCG--------------AGGC- -5'
5610 3' -67.9 NC_001806.1 + 2519 0.7 0.197354
Target:  5'- gGCGGCggGGgCGgGCCCGgCGCaCCGc -3'
miRNA:   3'- aCGCCGa-CCgGCgCGGGCgGCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 2546 0.66 0.379279
Target:  5'- cGCGGCgaucgaGGCCaGgGCCCGCgGgUCa- -3'
miRNA:   3'- aCGCCGa-----CCGG-CgCGGGCGgCgAGgc -5'
5610 3' -67.9 NC_001806.1 + 2663 0.73 0.142016
Target:  5'- gGCGGC-GGCCGCggGCgCCGCCGUguggCUGg -3'
miRNA:   3'- aCGCCGaCCGGCG--CG-GGCGGCGa---GGC- -5'
5610 3' -67.9 NC_001806.1 + 2700 0.67 0.349553
Target:  5'- gGgGGCU-GCCGcCGCCaGCCGC-CCa -3'
miRNA:   3'- aCgCCGAcCGGC-GCGGgCGGCGaGGc -5'
5610 3' -67.9 NC_001806.1 + 2769 0.68 0.306182
Target:  5'- cGCgGGCgGGCCuGCGCCgcggcggcccggggCGCCGCgggCUGg -3'
miRNA:   3'- aCG-CCGaCCGG-CGCGG--------------GCGGCGa--GGC- -5'
5610 3' -67.9 NC_001806.1 + 2985 0.66 0.394764
Target:  5'- cGCGGCgcggggaggcGGCgGCGgCCGCCaGCgcgUCGg -3'
miRNA:   3'- aCGCCGa---------CCGgCGCgGGCGG-CGa--GGC- -5'
5610 3' -67.9 NC_001806.1 + 3032 0.69 0.240573
Target:  5'- gGUGcGCUGGCCGC-CgCCGCCagcagggggcgcagGCUCUGg -3'
miRNA:   3'- aCGC-CGACCGGCGcG-GGCGG--------------CGAGGC- -5'
5610 3' -67.9 NC_001806.1 + 3091 0.69 0.264713
Target:  5'- cGCGGC-GGCgGCGgCCGCggaGCUCgGc -3'
miRNA:   3'- aCGCCGaCCGgCGCgGGCGg--CGAGgC- -5'
5610 3' -67.9 NC_001806.1 + 3181 0.67 0.32837
Target:  5'- gGCGGCcacGGCgGC-CUCGCUGCcgCCGg -3'
miRNA:   3'- aCGCCGa--CCGgCGcGGGCGGCGa-GGC- -5'
5610 3' -67.9 NC_001806.1 + 3304 0.67 0.349553
Target:  5'- gUGCGGC-GGCgGCggggaagcgggGCCCGCgGguccCUCCGg -3'
miRNA:   3'- -ACGCCGaCCGgCG-----------CGGGCGgC----GAGGC- -5'
5610 3' -67.9 NC_001806.1 + 3354 0.69 0.231548
Target:  5'- gGCuGGCgGGCCGgGCCCcgGCCaGCcCCGg -3'
miRNA:   3'- aCG-CCGaCCGGCgCGGG--CGG-CGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.