miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5610 5' -56.1 NC_001806.1 + 108580 1.09 0.003324
Target:  5'- aCGCGGAAAGACGGUCCACGUCACCCAc -3'
miRNA:   3'- -GCGCCUUUCUGCCAGGUGCAGUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 133708 0.8 0.23797
Target:  5'- gGCGGGGAGuCGGUCgGCGUC-CCCGc -3'
miRNA:   3'- gCGCCUUUCuGCCAGgUGCAGuGGGU- -5'
5610 5' -56.1 NC_001806.1 + 102132 0.75 0.435174
Target:  5'- gGCGGuuguuGAGGCGGUCCGCGUacacgUugCCGu -3'
miRNA:   3'- gCGCCu----UUCUGCCAGGUGCA-----GugGGU- -5'
5610 5' -56.1 NC_001806.1 + 144288 0.75 0.453135
Target:  5'- cCGCGGGccagcAGACGGcCCGCGaCACCCc -3'
miRNA:   3'- -GCGCCUu----UCUGCCaGGUGCaGUGGGu -5'
5610 5' -56.1 NC_001806.1 + 94810 0.75 0.462265
Target:  5'- aCGCGGggGgcGACGGgcagccCCAccCGUCGCCCGa -3'
miRNA:   3'- -GCGCCuuU--CUGCCa-----GGU--GCAGUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 50379 0.74 0.499707
Target:  5'- gGCGGAGcAGACGGUCCA-GUgGCUCu -3'
miRNA:   3'- gCGCCUU-UCUGCCAGGUgCAgUGGGu -5'
5610 5' -56.1 NC_001806.1 + 5664 0.73 0.548283
Target:  5'- gGCGGGgcgcgagggcGGGugGGUCCGCGcccCGCCCc -3'
miRNA:   3'- gCGCCU----------UUCugCCAGGUGCa--GUGGGu -5'
5610 5' -56.1 NC_001806.1 + 49500 0.73 0.548283
Target:  5'- gGCGGGucGGCGGUUCGCGgguggCGCCg- -3'
miRNA:   3'- gCGCCUuuCUGCCAGGUGCa----GUGGgu -5'
5610 5' -56.1 NC_001806.1 + 81342 0.73 0.588173
Target:  5'- aCGCGGGccgcaaccAGGCGG-CCgggGCGUCGCCCGc -3'
miRNA:   3'- -GCGCCUu-------UCUGCCaGG---UGCAGUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 85174 0.72 0.60732
Target:  5'- aCGCGGGAgacGGGCGGUucgccgccaccagCCGCGagGCCCu -3'
miRNA:   3'- -GCGCCUU---UCUGCCA-------------GGUGCagUGGGu -5'
5610 5' -56.1 NC_001806.1 + 95132 0.72 0.622485
Target:  5'- gGUGGAcgcccuaauaaucGGCGGUcaggCCACGUCACCCGa -3'
miRNA:   3'- gCGCCUuu-----------CUGCCA----GGUGCAGUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 68589 0.72 0.628556
Target:  5'- gGCGGcccuGGGGcCGGUCCGCGUC-CgCCAg -3'
miRNA:   3'- gCGCCu---UUCU-GCCAGGUGCAGuG-GGU- -5'
5610 5' -56.1 NC_001806.1 + 55015 0.71 0.679032
Target:  5'- aCGCGGGuaguAGGCGGcggccgUgCACGUCGCCUu -3'
miRNA:   3'- -GCGCCUu---UCUGCC------AgGUGCAGUGGGu -5'
5610 5' -56.1 NC_001806.1 + 56846 0.71 0.699016
Target:  5'- cCGCGGccAGGGCGG-CCGCGgcggGCCCAc -3'
miRNA:   3'- -GCGCCu-UUCUGCCaGGUGCag--UGGGU- -5'
5610 5' -56.1 NC_001806.1 + 74766 0.71 0.699016
Target:  5'- aGCGGGcgAAGGUGGcCCGCGaCGCCCGg -3'
miRNA:   3'- gCGCCU--UUCUGCCaGGUGCaGUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 150492 0.7 0.70893
Target:  5'- aGCgGGAAGGGCGG-CCGgGgcCGCCCAu -3'
miRNA:   3'- gCG-CCUUUCUGCCaGGUgCa-GUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 149928 0.7 0.71878
Target:  5'- uGCGGAGaggGGGCGGcCCGaGUCugCCu -3'
miRNA:   3'- gCGCCUU---UCUGCCaGGUgCAGugGGu -5'
5610 5' -56.1 NC_001806.1 + 134243 0.7 0.71878
Target:  5'- aGCGGggGGGCGGcCC-CGgCAgCCGg -3'
miRNA:   3'- gCGCCuuUCUGCCaGGuGCaGUgGGU- -5'
5610 5' -56.1 NC_001806.1 + 2989 0.7 0.728558
Target:  5'- gCGCGGGGAGGCGG-CgGCGgcCGCCa- -3'
miRNA:   3'- -GCGCCUUUCUGCCaGgUGCa-GUGGgu -5'
5610 5' -56.1 NC_001806.1 + 94662 0.7 0.738254
Target:  5'- gGCGGAccGuauCuGUaaCCACGUCACCCAg -3'
miRNA:   3'- gCGCCUuuCu--GcCA--GGUGCAGUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.