miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5610 5' -56.1 NC_001806.1 + 1492 0.66 0.908247
Target:  5'- aGCGGggGGGC-GUCguCGUCGggcUCCAg -3'
miRNA:   3'- gCGCCuuUCUGcCAGguGCAGU---GGGU- -5'
5610 5' -56.1 NC_001806.1 + 2639 0.66 0.922051
Target:  5'- gCGCGGGgagcaguaggccuccAGGGCGGcggCCGCGggCGCCg- -3'
miRNA:   3'- -GCGCCU---------------UUCUGCCa--GGUGCa-GUGGgu -5'
5610 5' -56.1 NC_001806.1 + 2989 0.7 0.728558
Target:  5'- gCGCGGGGAGGCGG-CgGCGgcCGCCa- -3'
miRNA:   3'- -GCGCCUUUCUGCCaGgUGCa-GUGGgu -5'
5610 5' -56.1 NC_001806.1 + 3540 0.67 0.895729
Target:  5'- cCGCgGGGGAGGCGGgcgCgGCGgacagcCGCCCc -3'
miRNA:   3'- -GCG-CCUUUCUGCCa--GgUGCa-----GUGGGu -5'
5610 5' -56.1 NC_001806.1 + 4367 0.69 0.794223
Target:  5'- cCGCGGAGGccgcGGgGGUCCucgcCGcCGCCCGg -3'
miRNA:   3'- -GCGCCUUU----CUgCCAGGu---GCaGUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 4429 0.66 0.919843
Target:  5'- gGUGGcccGGGCGGgggCgGCGUCcGCCCGg -3'
miRNA:   3'- gCGCCuu-UCUGCCa--GgUGCAG-UGGGU- -5'
5610 5' -56.1 NC_001806.1 + 4908 0.69 0.779725
Target:  5'- uCGCGGcGAGACGGcgUCCccgGCGUCcucgccggcgucgguGCCCGc -3'
miRNA:   3'- -GCGCCuUUCUGCC--AGG---UGCAG---------------UGGGU- -5'
5610 5' -56.1 NC_001806.1 + 5664 0.73 0.548283
Target:  5'- gGCGGGgcgcgagggcGGGugGGUCCGCGcccCGCCCc -3'
miRNA:   3'- gCGCCU----------UUCugCCAGGUGCa--GUGGGu -5'
5610 5' -56.1 NC_001806.1 + 7566 0.68 0.811827
Target:  5'- gCGuCGGGAuccacaccGCGGUUCGCGUCccGCCCAc -3'
miRNA:   3'- -GC-GCCUUuc------UGCCAGGUGCAG--UGGGU- -5'
5610 5' -56.1 NC_001806.1 + 12508 0.66 0.908247
Target:  5'- gGCGGAAca--GGUgCGCGUCcCCCGc -3'
miRNA:   3'- gCGCCUUucugCCAgGUGCAGuGGGU- -5'
5610 5' -56.1 NC_001806.1 + 13089 0.66 0.908247
Target:  5'- aGCGGGGcAGcaucccgauGCuGUCCAcCGUCACCCc -3'
miRNA:   3'- gCGCCUU-UC---------UGcCAGGU-GCAGUGGGu -5'
5610 5' -56.1 NC_001806.1 + 19646 0.68 0.845061
Target:  5'- aGCaGGAAG-CGGUCCACGcaacggUCGCCg- -3'
miRNA:   3'- gCGcCUUUCuGCCAGGUGC------AGUGGgu -5'
5610 5' -56.1 NC_001806.1 + 22556 0.69 0.803101
Target:  5'- aCGCGGcgcuGACGGgggCCGCGgggaGCCCc -3'
miRNA:   3'- -GCGCCuuu-CUGCCa--GGUGCag--UGGGu -5'
5610 5' -56.1 NC_001806.1 + 22670 0.66 0.916462
Target:  5'- cCGCGGGgauccucgccgcccuGGGGCGGcugUCCGCcG-CGCCCGc -3'
miRNA:   3'- -GCGCCU---------------UUCUGCC---AGGUG-CaGUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 24668 0.67 0.889132
Target:  5'- gCGCuGGGgcgcGAGGCGGUgCGCGcCgGCCCGg -3'
miRNA:   3'- -GCG-CCU----UUCUGCCAgGUGCaG-UGGGU- -5'
5610 5' -56.1 NC_001806.1 + 24885 0.66 0.924758
Target:  5'- cCGUGGAggugcugggggcgGAGGCGGgcuuggCCACGcC-CCCGc -3'
miRNA:   3'- -GCGCCU-------------UUCUGCCa-----GGUGCaGuGGGU- -5'
5610 5' -56.1 NC_001806.1 + 25406 0.67 0.898305
Target:  5'- gGCGGGAGGGggcgaggggcgguggUGGUgCGCGggCGCCCc -3'
miRNA:   3'- gCGCCUUUCU---------------GCCAgGUGCa-GUGGGu -5'
5610 5' -56.1 NC_001806.1 + 27030 0.66 0.919843
Target:  5'- gGCGGAggccGAGGCGGUcaucgggccgugCCugGg-GCCCGa -3'
miRNA:   3'- gCGCCU----UUCUGCCA------------GGugCagUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 30428 0.66 0.902102
Target:  5'- gCGUGGAGGGugGGcacgggcccUCCcgcgGCGcCGCCCc -3'
miRNA:   3'- -GCGCCUUUCugCC---------AGG----UGCaGUGGGu -5'
5610 5' -56.1 NC_001806.1 + 40992 0.69 0.803101
Target:  5'- cCGgGGGAucgugGGAUGuGUCCAUGgCGCCCGg -3'
miRNA:   3'- -GCgCCUU-----UCUGC-CAGGUGCaGUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.