miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5610 5' -56.1 NC_001806.1 + 42850 0.69 0.766766
Target:  5'- cCGCGGGccuGGugGGUCCcacccacuucCGUC-CCCAa -3'
miRNA:   3'- -GCGCCUu--UCugCCAGGu---------GCAGuGGGU- -5'
5610 5' -56.1 NC_001806.1 + 46829 0.7 0.747861
Target:  5'- gGCGGggGGugGGUUgGacaGcCGCCCu -3'
miRNA:   3'- gCGCCuuUCugCCAGgUg--CaGUGGGu -5'
5610 5' -56.1 NC_001806.1 + 49500 0.73 0.548283
Target:  5'- gGCGGGucGGCGGUUCGCGgguggCGCCg- -3'
miRNA:   3'- gCGCCUuuCUGCCAGGUGCa----GUGGgu -5'
5610 5' -56.1 NC_001806.1 + 50379 0.74 0.499707
Target:  5'- gGCGGAGcAGACGGUCCA-GUgGCUCu -3'
miRNA:   3'- gCGCCUU-UCUGCCAGGUgCAgUGGGu -5'
5610 5' -56.1 NC_001806.1 + 55015 0.71 0.679032
Target:  5'- aCGCGGGuaguAGGCGGcggccgUgCACGUCGCCUu -3'
miRNA:   3'- -GCGCCUu---UCUGCC------AgGUGCAGUGGGu -5'
5610 5' -56.1 NC_001806.1 + 56846 0.71 0.699016
Target:  5'- cCGCGGccAGGGCGG-CCGCGgcggGCCCAc -3'
miRNA:   3'- -GCGCCu-UUCUGCCaGGUGCag--UGGGU- -5'
5610 5' -56.1 NC_001806.1 + 57755 0.66 0.908247
Target:  5'- aGCGGcgGGACGGgCCGcCGUC-CCg- -3'
miRNA:   3'- gCGCCuuUCUGCCaGGU-GCAGuGGgu -5'
5610 5' -56.1 NC_001806.1 + 61536 0.68 0.852914
Target:  5'- aCGCGGucGGGCGGgggCUugGcgUGCCCGc -3'
miRNA:   3'- -GCGCCuuUCUGCCa--GGugCa-GUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 62468 0.66 0.906427
Target:  5'- gGCGGAccaggguggaggcuGGGAgGGUCC-CGUcCGCCUu -3'
miRNA:   3'- gCGCCU--------------UUCUgCCAGGuGCA-GUGGGu -5'
5610 5' -56.1 NC_001806.1 + 64188 0.69 0.785202
Target:  5'- uGCGGGuguacaucuggAAGACGGacUCCAUGUaguGCCCGc -3'
miRNA:   3'- gCGCCU-----------UUCUGCC--AGGUGCAg--UGGGU- -5'
5610 5' -56.1 NC_001806.1 + 64737 0.68 0.811827
Target:  5'- gCGCGGGuucGCGGUUCACGgcaUCuCCCAg -3'
miRNA:   3'- -GCGCCUuucUGCCAGGUGC---AGuGGGU- -5'
5610 5' -56.1 NC_001806.1 + 65448 0.67 0.881619
Target:  5'- aGCGG-GGGAUgccgcggcccccgGGUCCugGgggCGCCCGc -3'
miRNA:   3'- gCGCCuUUCUG-------------CCAGGugCa--GUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 68589 0.72 0.628556
Target:  5'- gGCGGcccuGGGGcCGGUCCGCGUC-CgCCAg -3'
miRNA:   3'- gCGCCu---UUCU-GCCAGGUGCAGuG-GGU- -5'
5610 5' -56.1 NC_001806.1 + 68950 0.7 0.747861
Target:  5'- aGCGGggGGcugUGGUCC-CGcCGCCCc -3'
miRNA:   3'- gCGCCuuUCu--GCCAGGuGCaGUGGGu -5'
5610 5' -56.1 NC_001806.1 + 69074 0.67 0.868028
Target:  5'- gCGCGuGucGACGGcccucagCCGCGUCAgCCCGc -3'
miRNA:   3'- -GCGCcUuuCUGCCa------GGUGCAGU-GGGU- -5'
5610 5' -56.1 NC_001806.1 + 74766 0.71 0.699016
Target:  5'- aGCGGGcgAAGGUGGcCCGCGaCGCCCGg -3'
miRNA:   3'- gCGCCU--UUCUGCCaGGUGCaGUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 75875 0.67 0.881619
Target:  5'- gGCGGugacccuugcccuGGAGACGGcCCuuGCGUUuaACCCAu -3'
miRNA:   3'- gCGCC-------------UUUCUGCCaGG--UGCAG--UGGGU- -5'
5610 5' -56.1 NC_001806.1 + 77388 0.69 0.785202
Target:  5'- gCGCGGGcgcGGCGG-CCGCGcccgCGCCCc -3'
miRNA:   3'- -GCGCCUuu-CUGCCaGGUGCa---GUGGGu -5'
5610 5' -56.1 NC_001806.1 + 77863 0.67 0.875277
Target:  5'- uCGaUGGAugcGGCGGccgagcUCUACGUCGCCCu -3'
miRNA:   3'- -GC-GCCUuu-CUGCC------AGGUGCAGUGGGu -5'
5610 5' -56.1 NC_001806.1 + 81342 0.73 0.588173
Target:  5'- aCGCGGGccgcaaccAGGCGG-CCgggGCGUCGCCCGc -3'
miRNA:   3'- -GCGCCUu-------UCUGCCaGG---UGCAGUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.