Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5610 | 5' | -56.1 | NC_001806.1 | + | 151453 | 0.69 | 0.776047 |
Target: 5'- gGCGGcgGGGCGG-CCGCGggcgCGCUCc -3' miRNA: 3'- gCGCCuuUCUGCCaGGUGCa---GUGGGu -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 150492 | 0.7 | 0.70893 |
Target: 5'- aGCgGGAAGGGCGG-CCGgGgcCGCCCAu -3' miRNA: 3'- gCG-CCUUUCUGCCaGGUgCa-GUGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 149928 | 0.7 | 0.71878 |
Target: 5'- uGCGGAGaggGGGCGGcCCGaGUCugCCu -3' miRNA: 3'- gCGCCUU---UCUGCCaGGUgCAGugGGu -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 147491 | 0.66 | 0.925292 |
Target: 5'- aGCGGGgcggcgccggagGGGGCGGcgCCGCGggaggGCCCGu -3' miRNA: 3'- gCGCCU------------UUCUGCCa-GGUGCag---UGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 144288 | 0.75 | 0.453135 |
Target: 5'- cCGCGGGccagcAGACGGcCCGCGaCACCCc -3' miRNA: 3'- -GCGCCUu----UCUGCCaGGUGCaGUGGGu -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 143140 | 0.69 | 0.776047 |
Target: 5'- cCGCGGAuGGGCGGgccuaCUugGUUuCCCGc -3' miRNA: 3'- -GCGCCUuUCUGCCa----GGugCAGuGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 134243 | 0.7 | 0.71878 |
Target: 5'- aGCGGggGGGCGGcCC-CGgCAgCCGg -3' miRNA: 3'- gCGCCuuUCUGCCaGGuGCaGUgGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 133708 | 0.8 | 0.23797 |
Target: 5'- gGCGGGGAGuCGGUCgGCGUC-CCCGc -3' miRNA: 3'- gCGCCUUUCuGCCAGgUGCAGuGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 132483 | 0.7 | 0.738254 |
Target: 5'- aGUGGcauaccACGGUCCACGcCGCCCc -3' miRNA: 3'- gCGCCuuuc--UGCCAGGUGCaGUGGGu -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 122370 | 0.69 | 0.785202 |
Target: 5'- gGCGGAAguGGcgcACGG-CCGCGUCGCUa- -3' miRNA: 3'- gCGCCUU--UC---UGCCaGGUGCAGUGGgu -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 119858 | 0.66 | 0.925292 |
Target: 5'- cCGUGGcguGGGGCGGgCgACG-CGCCCGc -3' miRNA: 3'- -GCGCCu--UUCUGCCaGgUGCaGUGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 114874 | 0.66 | 0.914161 |
Target: 5'- gGCGGggGGGuaaacUUCACGcUCACCCAg -3' miRNA: 3'- gCGCCuuUCUgcc--AGGUGC-AGUGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 111341 | 0.68 | 0.856001 |
Target: 5'- gGCGGggGGGgggguauauaaggccUGGgaucCCACGUC-CCCGg -3' miRNA: 3'- gCGCCuuUCU---------------GCCa---GGUGCAGuGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 108580 | 1.09 | 0.003324 |
Target: 5'- aCGCGGAAAGACGGUCCACGUCACCCAc -3' miRNA: 3'- -GCGCCUUUCUGCCAGGUGCAGUGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 102132 | 0.75 | 0.435174 |
Target: 5'- gGCGGuuguuGAGGCGGUCCGCGUacacgUugCCGu -3' miRNA: 3'- gCGCCu----UUCUGCCAGGUGCA-----GugGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 95132 | 0.72 | 0.622485 |
Target: 5'- gGUGGAcgcccuaauaaucGGCGGUcaggCCACGUCACCCGa -3' miRNA: 3'- gCGCCUuu-----------CUGCCA----GGUGCAGUGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 94810 | 0.75 | 0.462265 |
Target: 5'- aCGCGGggGgcGACGGgcagccCCAccCGUCGCCCGa -3' miRNA: 3'- -GCGCCuuU--CUGCCa-----GGU--GCAGUGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 94662 | 0.7 | 0.738254 |
Target: 5'- gGCGGAccGuauCuGUaaCCACGUCACCCAg -3' miRNA: 3'- gCGCCUuuCu--GcCA--GGUGCAGUGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 88952 | 0.68 | 0.811827 |
Target: 5'- cCGcCGGGgcG-UGGUCCACGcCGCCCc -3' miRNA: 3'- -GC-GCCUuuCuGCCAGGUGCaGUGGGu -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 85744 | 0.66 | 0.908247 |
Target: 5'- uGCGGuccgGAGccgcGCGG-CCACGUCGUCCGg -3' miRNA: 3'- gCGCCu---UUC----UGCCaGGUGCAGUGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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