miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5610 5' -56.1 NC_001806.1 + 77863 0.67 0.875277
Target:  5'- uCGaUGGAugcGGCGGccgagcUCUACGUCGCCCu -3'
miRNA:   3'- -GC-GCCUuu-CUGCC------AGGUGCAGUGGGu -5'
5610 5' -56.1 NC_001806.1 + 69074 0.67 0.868028
Target:  5'- gCGCGuGucGACGGcccucagCCGCGUCAgCCCGc -3'
miRNA:   3'- -GCGCcUuuCUGCCa------GGUGCAGU-GGGU- -5'
5610 5' -56.1 NC_001806.1 + 111341 0.68 0.856001
Target:  5'- gGCGGggGGGgggguauauaaggccUGGgaucCCACGUC-CCCGg -3'
miRNA:   3'- gCGCCuuUCU---------------GCCa---GGUGCAGuGGGU- -5'
5610 5' -56.1 NC_001806.1 + 61536 0.68 0.852914
Target:  5'- aCGCGGucGGGCGGgggCUugGcgUGCCCGc -3'
miRNA:   3'- -GCGCCuuUCUGCCa--GGugCa-GUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 19646 0.68 0.845061
Target:  5'- aGCaGGAAG-CGGUCCACGcaacggUCGCCg- -3'
miRNA:   3'- gCGcCUUUCuGCCAGGUGC------AGUGGgu -5'
5610 5' -56.1 NC_001806.1 + 7566 0.68 0.811827
Target:  5'- gCGuCGGGAuccacaccGCGGUUCGCGUCccGCCCAc -3'
miRNA:   3'- -GC-GCCUUuc------UGCCAGGUGCAG--UGGGU- -5'
5610 5' -56.1 NC_001806.1 + 64737 0.68 0.811827
Target:  5'- gCGCGGGuucGCGGUUCACGgcaUCuCCCAg -3'
miRNA:   3'- -GCGCCUuucUGCCAGGUGC---AGuGGGU- -5'
5610 5' -56.1 NC_001806.1 + 88952 0.68 0.811827
Target:  5'- cCGcCGGGgcG-UGGUCCACGcCGCCCc -3'
miRNA:   3'- -GC-GCCUuuCuGCCAGGUGCaGUGGGu -5'
5610 5' -56.1 NC_001806.1 + 40992 0.69 0.803101
Target:  5'- cCGgGGGAucgugGGAUGuGUCCAUGgCGCCCGg -3'
miRNA:   3'- -GCgCCUU-----UCUGC-CAGGUGCaGUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 22556 0.69 0.803101
Target:  5'- aCGCGGcgcuGACGGgggCCGCGgggaGCCCc -3'
miRNA:   3'- -GCGCCuuu-CUGCCa--GGUGCag--UGGGu -5'
5610 5' -56.1 NC_001806.1 + 4367 0.69 0.794223
Target:  5'- cCGCGGAGGccgcGGgGGUCCucgcCGcCGCCCGg -3'
miRNA:   3'- -GCGCCUUU----CUgCCAGGu---GCaGUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 64188 0.69 0.785202
Target:  5'- uGCGGGuguacaucuggAAGACGGacUCCAUGUaguGCCCGc -3'
miRNA:   3'- gCGCCU-----------UUCUGCC--AGGUGCAg--UGGGU- -5'
5610 5' -56.1 NC_001806.1 + 77388 0.69 0.785202
Target:  5'- gCGCGGGcgcGGCGG-CCGCGcccgCGCCCc -3'
miRNA:   3'- -GCGCCUuu-CUGCCaGGUGCa---GUGGGu -5'
5610 5' -56.1 NC_001806.1 + 122370 0.69 0.785202
Target:  5'- gGCGGAAguGGcgcACGG-CCGCGUCGCUa- -3'
miRNA:   3'- gCGCCUU--UC---UGCCaGGUGCAGUGGgu -5'
5610 5' -56.1 NC_001806.1 + 4908 0.69 0.779725
Target:  5'- uCGCGGcGAGACGGcgUCCccgGCGUCcucgccggcgucgguGCCCGc -3'
miRNA:   3'- -GCGCCuUUCUGCC--AGG---UGCAG---------------UGGGU- -5'
5610 5' -56.1 NC_001806.1 + 143140 0.69 0.776047
Target:  5'- cCGCGGAuGGGCGGgccuaCUugGUUuCCCGc -3'
miRNA:   3'- -GCGCCUuUCUGCCa----GGugCAGuGGGU- -5'
5610 5' -56.1 NC_001806.1 + 151453 0.69 0.776047
Target:  5'- gGCGGcgGGGCGG-CCGCGggcgCGCUCc -3'
miRNA:   3'- gCGCCuuUCUGCCaGGUGCa---GUGGGu -5'
5610 5' -56.1 NC_001806.1 + 42850 0.69 0.766766
Target:  5'- cCGCGGGccuGGugGGUCCcacccacuucCGUC-CCCAa -3'
miRNA:   3'- -GCGCCUu--UCugCCAGGu---------GCAGuGGGU- -5'
5610 5' -56.1 NC_001806.1 + 68950 0.7 0.747861
Target:  5'- aGCGGggGGcugUGGUCC-CGcCGCCCc -3'
miRNA:   3'- gCGCCuuUCu--GCCAGGuGCaGUGGGu -5'
5610 5' -56.1 NC_001806.1 + 46829 0.7 0.747861
Target:  5'- gGCGGggGGugGGUUgGacaGcCGCCCu -3'
miRNA:   3'- gCGCCuuUCugCCAGgUg--CaGUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.