miRNA display CGI


Results 61 - 80 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5611 3' -55.1 NC_001806.1 + 131305 0.66 0.922821
Target:  5'- -uUGCGCACgCAcucauCCAGCGCcaACCc -3'
miRNA:   3'- ccACGCGUGgGUuuu--GGUCGCGc-UGG- -5'
5611 3' -55.1 NC_001806.1 + 91211 0.66 0.922821
Target:  5'- uGGcGCGCGCCgCGGGACUcGUGgGgGCCa -3'
miRNA:   3'- -CCaCGCGUGG-GUUUUGGuCGCgC-UGG- -5'
5611 3' -55.1 NC_001806.1 + 68574 0.66 0.922821
Target:  5'- cGGccUGCGCACCgCGgcggcccugGGGCCGGUccGCGuCCg -3'
miRNA:   3'- -CC--ACGCGUGG-GU---------UUUGGUCG--CGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 41444 0.66 0.922821
Target:  5'- gGGUGCGcCGCCgCu---UCGGCGgacaCGACCg -3'
miRNA:   3'- -CCACGC-GUGG-GuuuuGGUCGC----GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 50656 0.66 0.922821
Target:  5'- gGGgacGCGCACcggcgCCGGGACgAcGCGgCGGCCa -3'
miRNA:   3'- -CCa--CGCGUG-----GGUUUUGgU-CGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 115564 0.66 0.922821
Target:  5'- gGGUGcCGCgaACUCGuggaGGACCcGUGUGGCCu -3'
miRNA:   3'- -CCAC-GCG--UGGGU----UUUGGuCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 46091 0.66 0.922821
Target:  5'- cGGgGCgGUuuuguccgGCCCGGGGCCuGCGCGGgCg -3'
miRNA:   3'- -CCaCG-CG--------UGGGUUUUGGuCGCGCUgG- -5'
5611 3' -55.1 NC_001806.1 + 49148 0.67 0.917204
Target:  5'- --cGCGCcucGCCCGuggcggacGAGCCAGCggGCGAUg -3'
miRNA:   3'- ccaCGCG---UGGGU--------UUUGGUCG--CGCUGg -5'
5611 3' -55.1 NC_001806.1 + 60044 0.67 0.917204
Target:  5'- --cGCGCcCUCGAAGCCGGCccuGCGuCUg -3'
miRNA:   3'- ccaCGCGuGGGUUUUGGUCG---CGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 112963 0.67 0.917204
Target:  5'- aGGUGCuGCGCCUgucucuGGAACa--CGCGAUCg -3'
miRNA:   3'- -CCACG-CGUGGG------UUUUGgucGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 147691 0.67 0.917204
Target:  5'- cGGgGCGCGggggcgggcCCCGGAGgCGGCGCucgcacgcacggGGCCa -3'
miRNA:   3'- -CCaCGCGU---------GGGUUUUgGUCGCG------------CUGG- -5'
5611 3' -55.1 NC_001806.1 + 72366 0.67 0.917204
Target:  5'- cGUGcCGUcggGCCCGGAACC--CGCGGCUc -3'
miRNA:   3'- cCAC-GCG---UGGGUUUUGGucGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 27056 0.67 0.917204
Target:  5'- cGUGCcugGgGCCCGAGGCCcGUGCccgGGCCc -3'
miRNA:   3'- cCACG---CgUGGGUUUUGGuCGCG---CUGG- -5'
5611 3' -55.1 NC_001806.1 + 29827 0.67 0.917204
Target:  5'- cGGgGCGUcucacgcaGCCCcccAGCCGGCcGCGGCUc -3'
miRNA:   3'- -CCaCGCG--------UGGGuu-UUGGUCG-CGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 128533 0.67 0.917204
Target:  5'- -aUGCGgGCCgCA--GCCAGacgGCGGCCc -3'
miRNA:   3'- ccACGCgUGG-GUuuUGGUCg--CGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 123120 0.67 0.917204
Target:  5'- --cGCGCACaCCGGguGGCgGGuCGCGGCg -3'
miRNA:   3'- ccaCGCGUG-GGUU--UUGgUC-GCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 131262 0.67 0.917204
Target:  5'- gGGcGCGCGCUUcAAGCUAcGCGUGcCCg -3'
miRNA:   3'- -CCaCGCGUGGGuUUUGGU-CGCGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 3395 0.67 0.916629
Target:  5'- aGGU-CGCcgucgaaGCCCucGGCCAGCGCcuCCa -3'
miRNA:   3'- -CCAcGCG-------UGGGuuUUGGUCGCGcuGG- -5'
5611 3' -55.1 NC_001806.1 + 78320 0.67 0.916629
Target:  5'- --gGCGCucgguCCCcgagcugGGAACCgAGCGCGGCg -3'
miRNA:   3'- ccaCGCGu----GGG-------UUUUGG-UCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 108646 0.67 0.915473
Target:  5'- uGUGCGUggcugcggacaugcGCCCGcgGCCAGCGU-ACa -3'
miRNA:   3'- cCACGCG--------------UGGGUuuUGGUCGCGcUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.