Results 41 - 60 of 267 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5611 | 3' | -55.1 | NC_001806.1 | + | 24512 | 0.66 | 0.933338 |
Target: 5'- cGGgccGUGCugCCGGcgcuggacGGCCgGGCGgCGGCCu -3' miRNA: 3'- -CCa--CGCGugGGUU--------UUGG-UCGC-GCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 50834 | 0.66 | 0.933338 |
Target: 5'- cGUGCGUccuccgagcgACCCAGccCCuguacGCGCGcACCa -3' miRNA: 3'- cCACGCG----------UGGGUUuuGGu----CGCGC-UGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 87893 | 0.66 | 0.933338 |
Target: 5'- cGGc-CGUACCCGu--CCAGgGgGACCu -3' miRNA: 3'- -CCacGCGUGGGUuuuGGUCgCgCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 73203 | 0.66 | 0.928199 |
Target: 5'- --cGCuCGCCCGAGcCCccgGGCGCaGACCu -3' miRNA: 3'- ccaCGcGUGGGUUUuGG---UCGCG-CUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 96125 | 0.66 | 0.928199 |
Target: 5'- -uUGCGcCGCCCGGAcugcaGCC-GCcCGACCu -3' miRNA: 3'- ccACGC-GUGGGUUU-----UGGuCGcGCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 49362 | 0.66 | 0.928199 |
Target: 5'- --gGCaGCGCCCcGGGCCcGaUGCGGCCc -3' miRNA: 3'- ccaCG-CGUGGGuUUUGGuC-GCGCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 27868 | 0.66 | 0.928199 |
Target: 5'- cGGUGgGCcugccuccCCUggGAC--GCGCGGCCa -3' miRNA: 3'- -CCACgCGu-------GGGuuUUGguCGCGCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 150080 | 0.66 | 0.928199 |
Target: 5'- --cGCGCGuCCCAGGggaggcaggcccACCgcGGgGCGGCCc -3' miRNA: 3'- ccaCGCGU-GGGUUU------------UGG--UCgCGCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 63373 | 0.66 | 0.928199 |
Target: 5'- cGGUGCagaGgUUGGAGCCGGCGaUGGCCg -3' miRNA: 3'- -CCACGcg-UgGGUUUUGGUCGC-GCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 100480 | 0.66 | 0.928199 |
Target: 5'- -uUGgGCACCgGucACCcugcGGCGCGGCa -3' miRNA: 3'- ccACgCGUGGgUuuUGG----UCGCGCUGg -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 44937 | 0.66 | 0.928199 |
Target: 5'- cGUG-GUGCCCGGggcuGGCUAGCGCGGg- -3' miRNA: 3'- cCACgCGUGGGUU----UUGGUCGCGCUgg -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 105164 | 0.66 | 0.928199 |
Target: 5'- gGGUGCcgaGC-CCCAGAGCaacGCG-GGCCc -3' miRNA: 3'- -CCACG---CGuGGGUUUUGgu-CGCgCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 84132 | 0.66 | 0.928199 |
Target: 5'- uGGgaaGCGCAUCgCGGGGCaCGcacGCGCGACg -3' miRNA: 3'- -CCa--CGCGUGG-GUUUUG-GU---CGCGCUGg -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 108855 | 0.66 | 0.928199 |
Target: 5'- cGGcUGUGguUCCGGccGCCAGCGCGuCg -3' miRNA: 3'- -CC-ACGCguGGGUUu-UGGUCGCGCuGg -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 33734 | 0.66 | 0.928199 |
Target: 5'- aGUGCGCGCgCCGgcucugcgGugUCGGCGgCGGCUg -3' miRNA: 3'- cCACGCGUG-GGU--------UuuGGUCGC-GCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 51120 | 0.66 | 0.922821 |
Target: 5'- cGG-GCGCACgugUCGGGGaggcGCGCGACCg -3' miRNA: 3'- -CCaCGCGUG---GGUUUUggu-CGCGCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 115564 | 0.66 | 0.922821 |
Target: 5'- gGGUGcCGCgaACUCGuggaGGACCcGUGUGGCCu -3' miRNA: 3'- -CCAC-GCG--UGGGU----UUUGGuCGCGCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 12783 | 0.66 | 0.922821 |
Target: 5'- -cUGC-CGCCCAccgcGCCGGCGaucaGGCCc -3' miRNA: 3'- ccACGcGUGGGUuu--UGGUCGCg---CUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 52070 | 0.66 | 0.922821 |
Target: 5'- --cGCGCGCCaucuGGACCGGgGUcccagcggcacGACCg -3' miRNA: 3'- ccaCGCGUGGgu--UUUGGUCgCG-----------CUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 91211 | 0.66 | 0.922821 |
Target: 5'- uGGcGCGCGCCgCGGGACUcGUGgGgGCCa -3' miRNA: 3'- -CCaCGCGUGG-GUUUUGGuCGCgC-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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