miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5611 3' -55.1 NC_001806.1 + 33593 0.8 0.279112
Target:  5'- cGGgcacGCGCGCCCuuaauGGACCGGCGCGgggcgggggGCCg -3'
miRNA:   3'- -CCa---CGCGUGGGu----UUUGGUCGCGC---------UGG- -5'
5611 3' -55.1 NC_001806.1 + 41501 0.8 0.25998
Target:  5'- -aUGCGgGCCCAgucgucccAGGCCAGCGCGGCa -3'
miRNA:   3'- ccACGCgUGGGU--------UUUGGUCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 56621 0.82 0.219505
Target:  5'- cGGgccGCGCgACCCu-GGCCGGUGCGACCu -3'
miRNA:   3'- -CCa--CGCG-UGGGuuUUGGUCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 10705 0.82 0.198877
Target:  5'- gGGgggGCGUACgCCAucGCCAGCGgGACCg -3'
miRNA:   3'- -CCa--CGCGUG-GGUuuUGGUCGCgCUGG- -5'
5611 3' -55.1 NC_001806.1 + 116980 0.86 0.122554
Target:  5'- gGGUGUGCACCUuuGA-CGGCGCGGCCg -3'
miRNA:   3'- -CCACGCGUGGGuuUUgGUCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 4392 0.76 0.434882
Target:  5'- --cGC-CGCCCGGGGCUugGGCGCGGCCu -3'
miRNA:   3'- ccaCGcGUGGGUUUUGG--UCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 147353 0.76 0.461327
Target:  5'- gGGUGCGUcgccgcccucuugGCCCcu-GCCGGCGCGAg- -3'
miRNA:   3'- -CCACGCG-------------UGGGuuuUGGUCGCGCUgg -5'
5611 3' -55.1 NC_001806.1 + 20174 0.74 0.569296
Target:  5'- cGGgccCGCcCCCGGGGCCGGCGCGGa- -3'
miRNA:   3'- -CCac-GCGuGGGUUUUGGUCGCGCUgg -5'
5611 3' -55.1 NC_001806.1 + 141396 0.74 0.569296
Target:  5'- uGUGUGC-CCCAGAgcauaaacACCAggccggggcggcGCGCGGCCa -3'
miRNA:   3'- cCACGCGuGGGUUU--------UGGU------------CGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 23020 0.74 0.559231
Target:  5'- uGGUGCucauGCGCCUgcgcgGGGACCugcGCGUGGCCg -3'
miRNA:   3'- -CCACG----CGUGGG-----UUUUGGu--CGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 100881 0.74 0.559231
Target:  5'- --gGCGcCGCCCGAucgcGCaCAGCGCGACg -3'
miRNA:   3'- ccaCGC-GUGGGUUu---UG-GUCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 114526 0.74 0.539259
Target:  5'- cGUGgcgaaCGCGCCCAAuuuccccccGGCCcuGCGCGACCu -3'
miRNA:   3'- cCAC-----GCGUGGGUU---------UUGGu-CGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 76312 0.74 0.529363
Target:  5'- cGGUGCGCAa-CGAc-CCGGCGgCGGCCg -3'
miRNA:   3'- -CCACGCGUggGUUuuGGUCGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 23721 0.74 0.529363
Target:  5'- cGGUGCGCcggGCCCGcccccgccgcccAGGCCGcGUGCGGCg -3'
miRNA:   3'- -CCACGCG---UGGGU------------UUUGGU-CGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 91673 0.75 0.500102
Target:  5'- gGGcGCGcCAUCCAAAguucGCCAGCGCcGCCc -3'
miRNA:   3'- -CCaCGC-GUGGGUUU----UGGUCGCGcUGG- -5'
5611 3' -55.1 NC_001806.1 + 62953 0.75 0.489552
Target:  5'- --aGCGCuCCCAGugaaagcGGCCGGCGCGAUa -3'
miRNA:   3'- ccaCGCGuGGGUU-------UUGGUCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 135073 0.75 0.480997
Target:  5'- gGGgacGCGCcggGCCgGAAAUCGGCGcCGACCg -3'
miRNA:   3'- -CCa--CGCG---UGGgUUUUGGUCGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 22777 0.76 0.471578
Target:  5'- gGGcGcCGCGCCCAGgccGGCC-GCGUGGCCg -3'
miRNA:   3'- -CCaC-GCGUGGGUU---UUGGuCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 22129 0.76 0.471578
Target:  5'- uGGgGgGCGCCCGAGGCggaggaGGCGCGACg -3'
miRNA:   3'- -CCaCgCGUGGGUUUUGg-----UCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 136347 0.76 0.462254
Target:  5'- --aGCGCcagcucaaaaaACCCGGGGCCGGCGCGcuCCg -3'
miRNA:   3'- ccaCGCG-----------UGGGUUUUGGUCGCGCu-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.