miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5611 3' -55.1 NC_001806.1 + 22129 0.76 0.471578
Target:  5'- uGGgGgGCGCCCGAGGCggaggaGGCGCGACg -3'
miRNA:   3'- -CCaCgCGUGGGUUUUGg-----UCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 22193 0.7 0.797439
Target:  5'- uGUGgGCGCCC-GAGCUGG-GCGACg -3'
miRNA:   3'- cCACgCGUGGGuUUUGGUCgCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 22276 0.68 0.856268
Target:  5'- gGGUG-GC-UCCAGAACCcGCGCGugguCCc -3'
miRNA:   3'- -CCACgCGuGGGUUUUGGuCGCGCu---GG- -5'
5611 3' -55.1 NC_001806.1 + 22439 0.68 0.871359
Target:  5'- gGGgccugGCGCACgCGGcGGCCGcCGUGGCCa -3'
miRNA:   3'- -CCa----CGCGUGgGUU-UUGGUcGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 22777 0.76 0.471578
Target:  5'- gGGcGcCGCGCCCAGgccGGCC-GCGUGGCCg -3'
miRNA:   3'- -CCaC-GCGUGGGUU---UUGGuCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 23020 0.74 0.559231
Target:  5'- uGGUGCucauGCGCCUgcgcgGGGACCugcGCGUGGCCg -3'
miRNA:   3'- -CCACG----CGUGGG-----UUUUGGu--CGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 23084 0.72 0.650825
Target:  5'- cGUGCGCGCCguGAGCCuGGuCGCcggGGCCc -3'
miRNA:   3'- cCACGCGUGGguUUUGG-UC-GCG---CUGG- -5'
5611 3' -55.1 NC_001806.1 + 23123 0.69 0.840366
Target:  5'- --cGCGCugCCGcgGGACCcGCGCcuGCCg -3'
miRNA:   3'- ccaCGCGugGGU--UUUGGuCGCGc-UGG- -5'
5611 3' -55.1 NC_001806.1 + 23199 0.68 0.878587
Target:  5'- -cUGCGCcCCCugcuGgCGGCGgCGGCCa -3'
miRNA:   3'- ccACGCGuGGGuuu-UgGUCGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 23226 0.67 0.898289
Target:  5'- --aGCGCACCgGAcGCCGccgacgcGCugGCGGCCg -3'
miRNA:   3'- ccaCGCGUGGgUUuUGGU-------CG--CGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 23311 0.68 0.878587
Target:  5'- cGGcccgGC-CGCCCGGAGgCGGCggcccGCGACCc -3'
miRNA:   3'- -CCa---CGcGUGGGUUUUgGUCG-----CGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 23459 0.68 0.863918
Target:  5'- --cGCgGCGCCCcGGGCCGcCGCGGCg -3'
miRNA:   3'- ccaCG-CGUGGGuUUUGGUcGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 23494 0.67 0.91135
Target:  5'- --cGCGC-CCCGugGCCGugucGCGcCGGCCc -3'
miRNA:   3'- ccaCGCGuGGGUuuUGGU----CGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 23553 0.66 0.940132
Target:  5'- cGGcgGCaGCcCCCGGGGcCCAGCcacacggcggcgcccGCGGCCg -3'
miRNA:   3'- -CCa-CG-CGuGGGUUUU-GGUCG---------------CGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 23721 0.74 0.529363
Target:  5'- cGGUGCGCcggGCCCGcccccgccgcccAGGCCGcGUGCGGCg -3'
miRNA:   3'- -CCACGCG---UGGGU------------UUUGGU-CGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 23826 0.7 0.788372
Target:  5'- -cUGCGCGCCUcgGGCCcGCugcgccgcaugGCGGCCu -3'
miRNA:   3'- ccACGCGUGGGuuUUGGuCG-----------CGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 24202 0.71 0.72148
Target:  5'- cGUGCGCGCCUgcGACUGGCcCG-CCg -3'
miRNA:   3'- cCACGCGUGGGuuUUGGUCGcGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 24454 0.68 0.878587
Target:  5'- cGUGCGCacgcgcuucgGCCCGGAcacGCCGGUGC--CCa -3'
miRNA:   3'- cCACGCG----------UGGGUUU---UGGUCGCGcuGG- -5'
5611 3' -55.1 NC_001806.1 + 24512 0.66 0.933338
Target:  5'- cGGgccGUGCugCCGGcgcuggacGGCCgGGCGgCGGCCu -3'
miRNA:   3'- -CCa--CGCGugGGUU--------UUGG-UCGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 24622 0.73 0.620147
Target:  5'- -cUGCGCGCgCUggGGCCugGGCGCG-CCg -3'
miRNA:   3'- ccACGCGUG-GGuuUUGG--UCGCGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.