miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5611 3' -55.1 NC_001806.1 + 40438 0.73 0.620147
Target:  5'- gGGUcucGCGuCGCCCAAAGuguuCCAGCGCGuugcgggacGCCu -3'
miRNA:   3'- -CCA---CGC-GUGGGUUUU----GGUCGCGC---------UGG- -5'
5611 3' -55.1 NC_001806.1 + 32651 0.73 0.627306
Target:  5'- uGGUGUGCuguaacacgagcccACCCGcGAgUGGCGUGGCCg -3'
miRNA:   3'- -CCACGCG--------------UGGGUuUUgGUCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 69987 0.73 0.630375
Target:  5'- uGGUGgucggggaCGCGCUgAGGGCCacguguAGCGCGGCCu -3'
miRNA:   3'- -CCAC--------GCGUGGgUUUUGG------UCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 57167 0.73 0.630375
Target:  5'- gGGUGCGCGCaUAAAGCCcAGCaCGGCg -3'
miRNA:   3'- -CCACGCGUGgGUUUUGG-UCGcGCUGg -5'
5611 3' -55.1 NC_001806.1 + 38023 0.73 0.630375
Target:  5'- --gGCaGC-CCCGGGACCAcCGCGACCc -3'
miRNA:   3'- ccaCG-CGuGGGUUUUGGUcGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 100751 0.73 0.630375
Target:  5'- --gGUGCGCCCGGA--CAGCGCGAgCu -3'
miRNA:   3'- ccaCGCGUGGGUUUugGUCGCGCUgG- -5'
5611 3' -55.1 NC_001806.1 + 75692 0.73 0.630375
Target:  5'- --aGCGCGCCCGcaguAGCCacgAGCGCugGGCCg -3'
miRNA:   3'- ccaCGCGUGGGUu---UUGG---UCGCG--CUGG- -5'
5611 3' -55.1 NC_001806.1 + 75904 0.72 0.650825
Target:  5'- -uUGCGUuuaACCCAuacacccccgaGAACCAGCGCcACCc -3'
miRNA:   3'- ccACGCG---UGGGU-----------UUUGGUCGCGcUGG- -5'
5611 3' -55.1 NC_001806.1 + 23084 0.72 0.650825
Target:  5'- cGUGCGCGCCguGAGCCuGGuCGCcggGGCCc -3'
miRNA:   3'- cCACGCGUGGguUUUGG-UC-GCG---CUGG- -5'
5611 3' -55.1 NC_001806.1 + 115116 0.72 0.650825
Target:  5'- cGG-GUGCGCCCAGGugCcgcGGCGCGcagggauggACCa -3'
miRNA:   3'- -CCaCGCGUGGGUUUugG---UCGCGC---------UGG- -5'
5611 3' -55.1 NC_001806.1 + 43240 0.72 0.654909
Target:  5'- gGGaGCGCGcCCCGAggaacaauaugagauGAUCcGCGCGGCCg -3'
miRNA:   3'- -CCaCGCGU-GGGUU---------------UUGGuCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 143637 0.72 0.661031
Target:  5'- --aGCGC-CCCGu--CCGGCGCG-CCg -3'
miRNA:   3'- ccaCGCGuGGGUuuuGGUCGCGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 150980 0.72 0.661031
Target:  5'- --cGCGgGCCCAcGAGCCgcGGCGCG-CCa -3'
miRNA:   3'- ccaCGCgUGGGU-UUUGG--UCGCGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 70947 0.72 0.668163
Target:  5'- cGUG-GCGCCCuuggucagcucggccGACCAGCGCG-CCg -3'
miRNA:   3'- cCACgCGUGGGuu-------------UUGGUCGCGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 3137 0.72 0.671215
Target:  5'- --aGCGCgggGCCCAGGGCCccgGCGACCa -3'
miRNA:   3'- ccaCGCG---UGGGUUUUGGucgCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 109284 0.72 0.671215
Target:  5'- cGGUGUuguuuggcggagGCGCCggCGAAacGCCAGCGgGGCCc -3'
miRNA:   3'- -CCACG------------CGUGG--GUUU--UGGUCGCgCUGG- -5'
5611 3' -55.1 NC_001806.1 + 7764 0.72 0.681367
Target:  5'- uGUGCGCugCa--AACguGCGCGAUCc -3'
miRNA:   3'- cCACGCGugGguuUUGguCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 56575 0.72 0.691478
Target:  5'- --aGCGCGCCCGcccCCAGaaagGUGACCa -3'
miRNA:   3'- ccaCGCGUGGGUuuuGGUCg---CGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 64876 0.72 0.691478
Target:  5'- cGGgccacgGCGggaucgGCCgCAAGACCAGCGcCGGCCu -3'
miRNA:   3'- -CCa-----CGCg-----UGG-GUUUUGGUCGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 73447 0.71 0.70154
Target:  5'- --cGCaCACCC-AGGCCGGgGUGGCCg -3'
miRNA:   3'- ccaCGcGUGGGuUUUGGUCgCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.