miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5611 3' -55.1 NC_001806.1 + 62953 0.75 0.489552
Target:  5'- --aGCGCuCCCAGugaaagcGGCCGGCGCGAUa -3'
miRNA:   3'- ccaCGCGuGGGUU-------UUGGUCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 91673 0.75 0.500102
Target:  5'- gGGcGCGcCAUCCAAAguucGCCAGCGCcGCCc -3'
miRNA:   3'- -CCaCGC-GUGGGUUU----UGGUCGCGcUGG- -5'
5611 3' -55.1 NC_001806.1 + 23721 0.74 0.529363
Target:  5'- cGGUGCGCcggGCCCGcccccgccgcccAGGCCGcGUGCGGCg -3'
miRNA:   3'- -CCACGCG---UGGGU------------UUUGGU-CGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 76312 0.74 0.529363
Target:  5'- cGGUGCGCAa-CGAc-CCGGCGgCGGCCg -3'
miRNA:   3'- -CCACGCGUggGUUuuGGUCGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 114526 0.74 0.539259
Target:  5'- cGUGgcgaaCGCGCCCAAuuuccccccGGCCcuGCGCGACCu -3'
miRNA:   3'- cCAC-----GCGUGGGUU---------UUGGu-CGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 23020 0.74 0.559231
Target:  5'- uGGUGCucauGCGCCUgcgcgGGGACCugcGCGUGGCCg -3'
miRNA:   3'- -CCACG----CGUGGG-----UUUUGGu--CGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 100881 0.74 0.559231
Target:  5'- --gGCGcCGCCCGAucgcGCaCAGCGCGACg -3'
miRNA:   3'- ccaCGC-GUGGGUUu---UG-GUCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 141396 0.74 0.569296
Target:  5'- uGUGUGC-CCCAGAgcauaaacACCAggccggggcggcGCGCGGCCa -3'
miRNA:   3'- cCACGCGuGGGUUU--------UGGU------------CGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 20174 0.74 0.569296
Target:  5'- cGGgccCGCcCCCGGGGCCGGCGCGGa- -3'
miRNA:   3'- -CCac-GCGuGGGUUUUGGUCGCGCUgg -5'
5611 3' -55.1 NC_001806.1 + 146563 0.74 0.569296
Target:  5'- uGG-GCGCGgCCAGAGaccacCCAGCGCccGACCc -3'
miRNA:   3'- -CCaCGCGUgGGUUUU-----GGUCGCG--CUGG- -5'
5611 3' -55.1 NC_001806.1 + 111188 0.73 0.589551
Target:  5'- -cUGCGCacacggGCCCuggggauAGCCuGCGCGGCCg -3'
miRNA:   3'- ccACGCG------UGGGuu-----UUGGuCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 30216 0.73 0.599728
Target:  5'- --cGCGCGCCC----CC-GCGCGGCCg -3'
miRNA:   3'- ccaCGCGUGGGuuuuGGuCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 147107 0.73 0.599728
Target:  5'- --cGCG-GCCCAGAAgCAGCGCGgggGCCg -3'
miRNA:   3'- ccaCGCgUGGGUUUUgGUCGCGC---UGG- -5'
5611 3' -55.1 NC_001806.1 + 81324 0.73 0.599728
Target:  5'- aGGUGCGCcgcaGgCCAAacgcgggccgcAACCAG-GCGGCCg -3'
miRNA:   3'- -CCACGCG----UgGGUU-----------UUGGUCgCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 144586 0.73 0.608909
Target:  5'- gGGUGcCGCGgcucuccgggcccCCCugcAGCCGGgGCGGCCa -3'
miRNA:   3'- -CCAC-GCGU-------------GGGuu-UUGGUCgCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 1553 0.73 0.60993
Target:  5'- --cGCGcCACCgGgccGGGCCGGCGCGcACCg -3'
miRNA:   3'- ccaCGC-GUGGgU---UUUGGUCGCGC-UGG- -5'
5611 3' -55.1 NC_001806.1 + 30611 0.73 0.60993
Target:  5'- cGGcGaCGCACCCccccuccgacucAGGGCCgggggGGCGCGGCCa -3'
miRNA:   3'- -CCaC-GCGUGGG------------UUUUGG-----UCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 43178 0.73 0.60993
Target:  5'- --cGCGCGCCCAAgGGCCAGUacccgcccGCGAUg -3'
miRNA:   3'- ccaCGCGUGGGUU-UUGGUCG--------CGCUGg -5'
5611 3' -55.1 NC_001806.1 + 79187 0.73 0.60993
Target:  5'- --gGgGCAUCCGGuguACCAGCGCGcCCc -3'
miRNA:   3'- ccaCgCGUGGGUUu--UGGUCGCGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 40438 0.73 0.620147
Target:  5'- gGGUcucGCGuCGCCCAAAGuguuCCAGCGCGuugcgggacGCCu -3'
miRNA:   3'- -CCA---CGC-GUGGGUUUU----GGUCGCGC---------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.