miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5611 3' -55.1 NC_001806.1 + 84132 0.66 0.928199
Target:  5'- uGGgaaGCGCAUCgCGGGGCaCGcacGCGCGACg -3'
miRNA:   3'- -CCa--CGCGUGG-GUUUUG-GU---CGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 115564 0.66 0.922821
Target:  5'- gGGUGcCGCgaACUCGuggaGGACCcGUGUGGCCu -3'
miRNA:   3'- -CCAC-GCG--UGGGU----UUUGGuCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 108855 0.66 0.928199
Target:  5'- cGGcUGUGguUCCGGccGCCAGCGCGuCg -3'
miRNA:   3'- -CC-ACGCguGGGUUu-UGGUCGCGCuGg -5'
5611 3' -55.1 NC_001806.1 + 12783 0.66 0.922821
Target:  5'- -cUGC-CGCCCAccgcGCCGGCGaucaGGCCc -3'
miRNA:   3'- ccACGcGUGGGUuu--UGGUCGCg---CUGG- -5'
5611 3' -55.1 NC_001806.1 + 21917 0.66 0.922821
Target:  5'- cGGgcccGCGCGgCgGugGCCGGCcGCGACg -3'
miRNA:   3'- -CCa---CGCGUgGgUuuUGGUCG-CGCUGg -5'
5611 3' -55.1 NC_001806.1 + 50656 0.66 0.922821
Target:  5'- gGGgacGCGCACcggcgCCGGGACgAcGCGgCGGCCa -3'
miRNA:   3'- -CCa--CGCGUG-----GGUUUUGgU-CGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 48051 0.66 0.938238
Target:  5'- uGGUGCGCAgCgCGgcuacggagGAGCCAgGgGCG-CCg -3'
miRNA:   3'- -CCACGCGUgG-GU---------UUUGGU-CgCGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 151181 0.66 0.933338
Target:  5'- cGGUGaCGCGCaggCGGAggGCgaGGCGCGGCg -3'
miRNA:   3'- -CCAC-GCGUGg--GUUU--UGg-UCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 91211 0.66 0.922821
Target:  5'- uGGcGCGCGCCgCGGGACUcGUGgGgGCCa -3'
miRNA:   3'- -CCaCGCGUGG-GUUUUGGuCGCgC-UGG- -5'
5611 3' -55.1 NC_001806.1 + 49362 0.66 0.928199
Target:  5'- --gGCaGCGCCCcGGGCCcGaUGCGGCCc -3'
miRNA:   3'- ccaCG-CGUGGGuUUUGGuC-GCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 24512 0.66 0.933338
Target:  5'- cGGgccGUGCugCCGGcgcuggacGGCCgGGCGgCGGCCu -3'
miRNA:   3'- -CCa--CGCGugGGUU--------UUGG-UCGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 92455 0.66 0.938238
Target:  5'- cGG-GCGCGagcgccaacgcgUCCGAGGCCgccaaGGCGCGggucGCCa -3'
miRNA:   3'- -CCaCGCGU------------GGGUUUUGG-----UCGCGC----UGG- -5'
5611 3' -55.1 NC_001806.1 + 87893 0.66 0.933338
Target:  5'- cGGc-CGUACCCGu--CCAGgGgGACCu -3'
miRNA:   3'- -CCacGCGUGGGUuuuGGUCgCgCUGG- -5'
5611 3' -55.1 NC_001806.1 + 63373 0.66 0.928199
Target:  5'- cGGUGCagaGgUUGGAGCCGGCGaUGGCCg -3'
miRNA:   3'- -CCACGcg-UgGGUUUUGGUCGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 96125 0.66 0.928199
Target:  5'- -uUGCGcCGCCCGGAcugcaGCC-GCcCGACCu -3'
miRNA:   3'- ccACGC-GUGGGUUU-----UGGuCGcGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 105164 0.66 0.928199
Target:  5'- gGGUGCcgaGC-CCCAGAGCaacGCG-GGCCc -3'
miRNA:   3'- -CCACG---CGuGGGUUUUGgu-CGCgCUGG- -5'
5611 3' -55.1 NC_001806.1 + 23553 0.66 0.940132
Target:  5'- cGGcgGCaGCcCCCGGGGcCCAGCcacacggcggcgcccGCGGCCg -3'
miRNA:   3'- -CCa-CG-CGuGGGUUUU-GGUCG---------------CGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 119292 0.66 0.942446
Target:  5'- cGG-GgGCGCCCGcAGACCcgcccaucgucggGGCGUccGACCc -3'
miRNA:   3'- -CCaCgCGUGGGU-UUUGG-------------UCGCG--CUGG- -5'
5611 3' -55.1 NC_001806.1 + 38152 0.66 0.938238
Target:  5'- cGGUcGcCGgGCCCcga---GGCGCGACCa -3'
miRNA:   3'- -CCA-C-GCgUGGGuuuuggUCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 51120 0.66 0.922821
Target:  5'- cGG-GCGCACgugUCGGGGaggcGCGCGACCg -3'
miRNA:   3'- -CCaCGCGUG---GGUUUUggu-CGCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.