miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5611 3' -55.1 NC_001806.1 + 52070 0.66 0.922821
Target:  5'- --cGCGCGCCaucuGGACCGGgGUcccagcggcacGACCg -3'
miRNA:   3'- ccaCGCGUGGgu--UUUGGUCgCG-----------CUGG- -5'
5611 3' -55.1 NC_001806.1 + 33734 0.66 0.928199
Target:  5'- aGUGCGCGCgCCGgcucugcgGugUCGGCGgCGGCUg -3'
miRNA:   3'- cCACGCGUG-GGU--------UuuGGUCGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 19043 0.66 0.922821
Target:  5'- cGUGCGCugCUccgccucuGGGCCuGGCGC-ACCg -3'
miRNA:   3'- cCACGCGugGGu-------UUUGG-UCGCGcUGG- -5'
5611 3' -55.1 NC_001806.1 + 51120 0.66 0.922821
Target:  5'- cGG-GCGCACgugUCGGGGaggcGCGCGACCg -3'
miRNA:   3'- -CCaCGCGUG---GGUUUUggu-CGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 115564 0.66 0.922821
Target:  5'- gGGUGcCGCgaACUCGuggaGGACCcGUGUGGCCu -3'
miRNA:   3'- -CCAC-GCG--UGGGU----UUUGGuCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 131305 0.66 0.922821
Target:  5'- -uUGCGCACgCAcucauCCAGCGCcaACCc -3'
miRNA:   3'- ccACGCGUGgGUuuu--GGUCGCGc-UGG- -5'
5611 3' -55.1 NC_001806.1 + 49362 0.66 0.928199
Target:  5'- --gGCaGCGCCCcGGGCCcGaUGCGGCCc -3'
miRNA:   3'- ccaCG-CGUGGGuUUUGGuC-GCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 91211 0.66 0.922821
Target:  5'- uGGcGCGCGCCgCGGGACUcGUGgGgGCCa -3'
miRNA:   3'- -CCaCGCGUGG-GUUUUGGuCGCgC-UGG- -5'
5611 3' -55.1 NC_001806.1 + 50656 0.66 0.922821
Target:  5'- gGGgacGCGCACcggcgCCGGGACgAcGCGgCGGCCa -3'
miRNA:   3'- -CCa--CGCGUG-----GGUUUUGgU-CGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 73203 0.66 0.928199
Target:  5'- --cGCuCGCCCGAGcCCccgGGCGCaGACCu -3'
miRNA:   3'- ccaCGcGUGGGUUUuGG---UCGCG-CUGG- -5'
5611 3' -55.1 NC_001806.1 + 150080 0.66 0.928199
Target:  5'- --cGCGCGuCCCAGGggaggcaggcccACCgcGGgGCGGCCc -3'
miRNA:   3'- ccaCGCGU-GGGUUU------------UGG--UCgCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 100480 0.66 0.928199
Target:  5'- -uUGgGCACCgGucACCcugcGGCGCGGCa -3'
miRNA:   3'- ccACgCGUGGgUuuUGG----UCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 68574 0.66 0.922821
Target:  5'- cGGccUGCGCACCgCGgcggcccugGGGCCGGUccGCGuCCg -3'
miRNA:   3'- -CC--ACGCGUGG-GU---------UUUGGUCG--CGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 44937 0.66 0.928199
Target:  5'- cGUG-GUGCCCGGggcuGGCUAGCGCGGg- -3'
miRNA:   3'- cCACgCGUGGGUU----UUGGUCGCGCUgg -5'
5611 3' -55.1 NC_001806.1 + 12783 0.66 0.922821
Target:  5'- -cUGC-CGCCCAccgcGCCGGCGaucaGGCCc -3'
miRNA:   3'- ccACGcGUGGGUuu--UGGUCGCg---CUGG- -5'
5611 3' -55.1 NC_001806.1 + 94774 0.66 0.94733
Target:  5'- cGG-GCGCucUCCGuguuGGACCAuGCGCuGGCCc -3'
miRNA:   3'- -CCaCGCGu-GGGU----UUUGGU-CGCG-CUGG- -5'
5611 3' -55.1 NC_001806.1 + 46091 0.66 0.922821
Target:  5'- cGGgGCgGUuuuguccgGCCCGGGGCCuGCGCGGgCg -3'
miRNA:   3'- -CCaCG-CG--------UGGGUUUUGGuCGCGCUgG- -5'
5611 3' -55.1 NC_001806.1 + 108855 0.66 0.928199
Target:  5'- cGGcUGUGguUCCGGccGCCAGCGCGuCg -3'
miRNA:   3'- -CC-ACGCguGGGUUu-UGGUCGCGCuGg -5'
5611 3' -55.1 NC_001806.1 + 21917 0.66 0.922821
Target:  5'- cGGgcccGCGCGgCgGugGCCGGCcGCGACg -3'
miRNA:   3'- -CCa---CGCGUgGgUuuUGGUCG-CGCUGg -5'
5611 3' -55.1 NC_001806.1 + 41444 0.66 0.922821
Target:  5'- gGGUGCGcCGCCgCu---UCGGCGgacaCGACCg -3'
miRNA:   3'- -CCACGC-GUGG-GuuuuGGUCGC----GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.