miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5611 3' -55.1 NC_001806.1 + 43 0.67 0.91135
Target:  5'- gGGUGUGUuuugggggggGCCCGuuuUCGGCGUcuGGCCg -3'
miRNA:   3'- -CCACGCG----------UGGGUuuuGGUCGCG--CUGG- -5'
5611 3' -55.1 NC_001806.1 + 375 0.68 0.871359
Target:  5'- --cGCGCGCCCGcgggGGGCCcGgGCuGCCa -3'
miRNA:   3'- ccaCGCGUGGGU----UUUGGuCgCGcUGG- -5'
5611 3' -55.1 NC_001806.1 + 1553 0.73 0.60993
Target:  5'- --cGCGcCACCgGgccGGGCCGGCGCGcACCg -3'
miRNA:   3'- ccaCGC-GUGGgU---UUUGGUCGCGC-UGG- -5'
5611 3' -55.1 NC_001806.1 + 1618 0.77 0.408471
Target:  5'- --gGCGCGCCCAGGccCCAGCGCGcGCa -3'
miRNA:   3'- ccaCGCGUGGGUUUu-GGUCGCGC-UGg -5'
5611 3' -55.1 NC_001806.1 + 1703 0.68 0.848415
Target:  5'- cGGUG-GUcCCCGAGGCCGccGCcCGGCCg -3'
miRNA:   3'- -CCACgCGuGGGUUUUGGU--CGcGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 1803 0.66 0.942902
Target:  5'- cGUGCGCACgCGGuagcgcacguuGCCGcCGCGGCa -3'
miRNA:   3'- cCACGCGUGgGUUu----------UGGUcGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 1874 0.66 0.937759
Target:  5'- cGUGCGCGgCCu---CCAcGCGCGcgaagacccccggGCCg -3'
miRNA:   3'- cCACGCGUgGGuuuuGGU-CGCGC-------------UGG- -5'
5611 3' -55.1 NC_001806.1 + 1916 0.71 0.731339
Target:  5'- --cGCG-GCCCGAGGCCAGCaccguGCGGCg -3'
miRNA:   3'- ccaCGCgUGGGUUUUGGUCG-----CGCUGg -5'
5611 3' -55.1 NC_001806.1 + 2168 0.67 0.892379
Target:  5'- -cUGUGCGCCCAGcGCCgacacgucgggGGCGcCGGuCCa -3'
miRNA:   3'- ccACGCGUGGGUUuUGG-----------UCGC-GCU-GG- -5'
5611 3' -55.1 NC_001806.1 + 2387 0.69 0.840366
Target:  5'- gGGgaucugGCGCAUCCAGGccGCCA-UGCGGCg -3'
miRNA:   3'- -CCa-----CGCGUGGGUUU--UGGUcGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 2524 0.7 0.788372
Target:  5'- cGGggGCGgGCCCGGcgcACC-GCGCGGCg -3'
miRNA:   3'- -CCa-CGCgUGGGUUu--UGGuCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 2727 0.7 0.797439
Target:  5'- gGGUcgGgGCCCucggcGGGCCGGCGCGACa -3'
miRNA:   3'- -CCAcgCgUGGGu----UUUGGUCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 2973 0.66 0.937759
Target:  5'- -uUGCGC-CCCucccgcggcgcggGGAGgCGGCGgCGGCCg -3'
miRNA:   3'- ccACGCGuGGG-------------UUUUgGUCGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 3137 0.72 0.671215
Target:  5'- --aGCGCgggGCCCAGGGCCccgGCGACCa -3'
miRNA:   3'- ccaCGCG---UGGGUUUUGGucgCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 3395 0.67 0.916629
Target:  5'- aGGU-CGCcgucgaaGCCCucGGCCAGCGCcuCCa -3'
miRNA:   3'- -CCAcGCG-------UGGGuuUUGGUCGCGcuGG- -5'
5611 3' -55.1 NC_001806.1 + 3441 0.68 0.856268
Target:  5'- aGGcgGCcagGCACUCGAcGGCCA-CGCGGCCg -3'
miRNA:   3'- -CCa-CG---CGUGGGUU-UUGGUcGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 3527 0.67 0.91135
Target:  5'- gGGU-CGuCGCCCcccgcggggGAGGCgGGCGCGGCg -3'
miRNA:   3'- -CCAcGC-GUGGG---------UUUUGgUCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 3616 0.71 0.731339
Target:  5'- --cGCGCGCUCGc--CCGGUGCGGCg -3'
miRNA:   3'- ccaCGCGUGGGUuuuGGUCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 3714 0.68 0.863918
Target:  5'- --cGCGCGCCaacaGGGGCgcguaGGCGCGGCg -3'
miRNA:   3'- ccaCGCGUGGg---UUUUGg----UCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 3813 0.71 0.711543
Target:  5'- cGUGCGCcagGCCCc-AGCCGaaGCGGCCg -3'
miRNA:   3'- cCACGCG---UGGGuuUUGGUcgCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.