miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5611 3' -55.1 NC_001806.1 + 3913 0.66 0.942902
Target:  5'- --cGCgGCGCCCGAGAuCCGGaaGCaGGCCu -3'
miRNA:   3'- ccaCG-CGUGGGUUUU-GGUCg-CG-CUGG- -5'
5611 3' -55.1 NC_001806.1 + 4080 0.69 0.823709
Target:  5'- cGGgGCGCccgagGCCUcGAACCGGCGuCGcGCCu -3'
miRNA:   3'- -CCaCGCG-----UGGGuUUUGGUCGC-GC-UGG- -5'
5611 3' -55.1 NC_001806.1 + 4124 0.69 0.840366
Target:  5'- cGG-GCGCcCCCcaGAGGCCcGgGCGGCUg -3'
miRNA:   3'- -CCaCGCGuGGG--UUUUGGuCgCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 4392 0.76 0.434882
Target:  5'- --cGC-CGCCCGGGGCUugGGCGCGGCCu -3'
miRNA:   3'- ccaCGcGUGGGUUUUGG--UCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 4442 0.7 0.779166
Target:  5'- gGGgcgGCGUccGCCCGGGggcuGCCGGCGCcgcgcucgacgGACCc -3'
miRNA:   3'- -CCa--CGCG--UGGGUUU----UGGUCGCG-----------CUGG- -5'
5611 3' -55.1 NC_001806.1 + 5107 0.68 0.878587
Target:  5'- cGGUG-GgGCCCGggGAGCCGGgGCG-CUg -3'
miRNA:   3'- -CCACgCgUGGGU--UUUGGUCgCGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 6050 0.66 0.94733
Target:  5'- --gGCGCcguGCCCGAcuCC-GCGcCGGCCc -3'
miRNA:   3'- ccaCGCG---UGGGUUuuGGuCGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 6115 0.78 0.350908
Target:  5'- --gGCGCACauaAAGGcCCGGCGCGACCg -3'
miRNA:   3'- ccaCGCGUGgg-UUUU-GGUCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 6879 0.78 0.366753
Target:  5'- gGGUGUgGCACaucgaAGAACCGGCGgGACCg -3'
miRNA:   3'- -CCACG-CGUGgg---UUUUGGUCGCgCUGG- -5'
5611 3' -55.1 NC_001806.1 + 7695 0.68 0.848415
Target:  5'- -uUGCGCACCUGGugauguuGCCcGCG-GACCa -3'
miRNA:   3'- ccACGCGUGGGUUu------UGGuCGCgCUGG- -5'
5611 3' -55.1 NC_001806.1 + 7764 0.72 0.681367
Target:  5'- uGUGCGCugCa--AACguGCGCGAUCc -3'
miRNA:   3'- cCACGCGugGguuUUGguCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 10705 0.82 0.198877
Target:  5'- gGGgggGCGUACgCCAucGCCAGCGgGACCg -3'
miRNA:   3'- -CCa--CGCGUG-GGUuuUGGUCGCgCUGG- -5'
5611 3' -55.1 NC_001806.1 + 12732 0.67 0.91372
Target:  5'- uGGcgGCGCAUCCAguAcacaauuccgcaaauGACCAGgGCuGCCa -3'
miRNA:   3'- -CCa-CGCGUGGGU--U---------------UUGGUCgCGcUGG- -5'
5611 3' -55.1 NC_001806.1 + 12783 0.66 0.922821
Target:  5'- -cUGC-CGCCCAccgcGCCGGCGaucaGGCCc -3'
miRNA:   3'- ccACGcGUGGGUuu--UGGUCGCg---CUGG- -5'
5611 3' -55.1 NC_001806.1 + 19043 0.66 0.922821
Target:  5'- cGUGCGCugCUccgccucuGGGCCuGGCGC-ACCg -3'
miRNA:   3'- cCACGCGugGGu-------UUUGG-UCGCGcUGG- -5'
5611 3' -55.1 NC_001806.1 + 19113 0.68 0.856268
Target:  5'- gGGUGgGgGCCCGGGGCU-GCGUuucccggguaGACCg -3'
miRNA:   3'- -CCACgCgUGGGUUUUGGuCGCG----------CUGG- -5'
5611 3' -55.1 NC_001806.1 + 20174 0.74 0.569296
Target:  5'- cGGgccCGCcCCCGGGGCCGGCGCGGa- -3'
miRNA:   3'- -CCac-GCGuGGGUUUUGGUCGCGCUgg -5'
5611 3' -55.1 NC_001806.1 + 20592 0.66 0.937759
Target:  5'- --cGCGCcccGCCCAuggcagauggcgcGGAUgGGCGgGGCCg -3'
miRNA:   3'- ccaCGCG---UGGGU-------------UUUGgUCGCgCUGG- -5'
5611 3' -55.1 NC_001806.1 + 21850 0.66 0.942902
Target:  5'- --gGcCGCGCCCAAGcCCcGgGCGGCg -3'
miRNA:   3'- ccaC-GCGUGGGUUUuGGuCgCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 21917 0.66 0.922821
Target:  5'- cGGgcccGCGCGgCgGugGCCGGCcGCGACg -3'
miRNA:   3'- -CCa---CGCGUgGgUuuUGGUCG-CGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.