miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5611 3' -55.1 NC_001806.1 + 138670 0.69 0.815115
Target:  5'- -cUGCaGCGCCCGGGcCUGGaUGCGACCc -3'
miRNA:   3'- ccACG-CGUGGGUUUuGGUC-GCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 136347 0.76 0.462254
Target:  5'- --aGCGCcagcucaaaaaACCCGGGGCCGGCGCGcuCCg -3'
miRNA:   3'- ccaCGCG-----------UGGGUUUUGGUCGCGCu-GG- -5'
5611 3' -55.1 NC_001806.1 + 136107 0.7 0.750792
Target:  5'- -uUGCGCAgCCGgcAGACguGCGCGugUu -3'
miRNA:   3'- ccACGCGUgGGU--UUUGguCGCGCugG- -5'
5611 3' -55.1 NC_001806.1 + 135383 0.66 0.942902
Target:  5'- --aGCGCACCagcucguGCUcccagaGGCGCGACa -3'
miRNA:   3'- ccaCGCGUGGguuu---UGG------UCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 135073 0.75 0.480997
Target:  5'- gGGgacGCGCcggGCCgGAAAUCGGCGcCGACCg -3'
miRNA:   3'- -CCa--CGCG---UGGgUUUUGGUCGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 134995 0.69 0.840366
Target:  5'- cGGUGCccgaugccccCGCCCugguCCGGCGCG-CCu -3'
miRNA:   3'- -CCACGc---------GUGGGuuuuGGUCGCGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 132188 0.69 0.840366
Target:  5'- uGG-GCGCGCCUGGcGGCCAuuCGCGACa -3'
miRNA:   3'- -CCaCGCGUGGGUU-UUGGUc-GCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 132155 0.67 0.898934
Target:  5'- --cGCGUugCCGAGcaucCCGacGCGCGGCUg -3'
miRNA:   3'- ccaCGCGugGGUUUu---GGU--CGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 131305 0.66 0.922821
Target:  5'- -uUGCGCACgCAcucauCCAGCGCcaACCc -3'
miRNA:   3'- ccACGCGUGgGUuuu--GGUCGCGc-UGG- -5'
5611 3' -55.1 NC_001806.1 + 131262 0.67 0.917204
Target:  5'- gGGcGCGCGCUUcAAGCUAcGCGUGcCCg -3'
miRNA:   3'- -CCaCGCGUGGGuUUUGGU-CGCGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 130808 0.68 0.871359
Target:  5'- uGUGCaGCACCau-GGCC-GCGCG-CCu -3'
miRNA:   3'- cCACG-CGUGGguuUUGGuCGCGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 130415 0.7 0.750792
Target:  5'- cGGgGCGUACauuucgacgcccUCAGGGcCCAGCGCGAUCu -3'
miRNA:   3'- -CCaCGCGUG------------GGUUUU-GGUCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 130032 0.68 0.848415
Target:  5'- gGGUGCGCACCCuccGCaAGgGgGAgCu -3'
miRNA:   3'- -CCACGCGUGGGuuuUGgUCgCgCUgG- -5'
5611 3' -55.1 NC_001806.1 + 129745 0.66 0.938238
Target:  5'- --aGCGCGCCUu-GGCgGGgGCGAUa -3'
miRNA:   3'- ccaCGCGUGGGuuUUGgUCgCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 129663 0.66 0.942902
Target:  5'- -cUGCGCccGCCCGGGccGCCGa-GCGGCCc -3'
miRNA:   3'- ccACGCG--UGGGUUU--UGGUcgCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 129078 0.7 0.760366
Target:  5'- --aGCGC-CCCGAcGGCCAgguGCGUGACUg -3'
miRNA:   3'- ccaCGCGuGGGUU-UUGGU---CGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 128533 0.67 0.917204
Target:  5'- -aUGCGgGCCgCA--GCCAGacgGCGGCCc -3'
miRNA:   3'- ccACGCgUGG-GUuuUGGUCg--CGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 127904 0.67 0.89171
Target:  5'- gGGUGCaGCggagcacggccauGCCgAGGGCaaaGGCGgCGACCa -3'
miRNA:   3'- -CCACG-CG-------------UGGgUUUUGg--UCGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 127764 0.68 0.878587
Target:  5'- gGGUGCGgGCCUGuggcGGCCGucuCGCGAUCc -3'
miRNA:   3'- -CCACGCgUGGGUu---UUGGUc--GCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 125570 0.68 0.885594
Target:  5'- uGG-GgGCACCCAc-GCC--CGCGACCc -3'
miRNA:   3'- -CCaCgCGUGGGUuuUGGucGCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.