miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5611 3' -55.1 NC_001806.1 + 151753 0.67 0.91135
Target:  5'- gGGUGUGUuuugggggggGCCCGuuuUCGGCGUcuGGCCg -3'
miRNA:   3'- -CCACGCG----------UGGGUuuuGGUCGCG--CUGG- -5'
5611 3' -55.1 NC_001806.1 + 151522 0.7 0.779166
Target:  5'- uGUGCgguugggacgGCGCCCGuGGGCCcGgGCGGCCg -3'
miRNA:   3'- cCACG----------CGUGGGU-UUUGGuCgCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 151181 0.66 0.933338
Target:  5'- cGGUGaCGCGCaggCGGAggGCgaGGCGCGGCg -3'
miRNA:   3'- -CCAC-GCGUGg--GUUU--UGg-UCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 151033 0.7 0.760366
Target:  5'- aGGUgGCGCACCCGGAcgugggGCgagaAGCGC-ACCc -3'
miRNA:   3'- -CCA-CGCGUGGGUUU------UGg---UCGCGcUGG- -5'
5611 3' -55.1 NC_001806.1 + 150980 0.72 0.661031
Target:  5'- --cGCGgGCCCAcGAGCCgcGGCGCG-CCa -3'
miRNA:   3'- ccaCGCgUGGGU-UUUGG--UCGCGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 150080 0.66 0.928199
Target:  5'- --cGCGCGuCCCAGGggaggcaggcccACCgcGGgGCGGCCc -3'
miRNA:   3'- ccaCGCGU-GGGUUU------------UGG--UCgCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 147691 0.67 0.917204
Target:  5'- cGGgGCGCGggggcgggcCCCGGAGgCGGCGCucgcacgcacggGGCCa -3'
miRNA:   3'- -CCaCGCGU---------GGGUUUUgGUCGCG------------CUGG- -5'
5611 3' -55.1 NC_001806.1 + 147605 0.67 0.910751
Target:  5'- uGGUuCGCGgCCuGAGCCagggacgAGUGCGACUg -3'
miRNA:   3'- -CCAcGCGUgGGuUUUGG-------UCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 147353 0.76 0.461327
Target:  5'- gGGUGCGUcgccgcccucuugGCCCcu-GCCGGCGCGAg- -3'
miRNA:   3'- -CCACGCG-------------UGGGuuuUGGUCGCGCUgg -5'
5611 3' -55.1 NC_001806.1 + 147107 0.73 0.599728
Target:  5'- --cGCG-GCCCAGAAgCAGCGCGgggGCCg -3'
miRNA:   3'- ccaCGCgUGGGUUUUgGUCGCGC---UGG- -5'
5611 3' -55.1 NC_001806.1 + 146838 0.68 0.856268
Target:  5'- gGGUGCgGCGgCUccAGCCGGggacCGCGGCCc -3'
miRNA:   3'- -CCACG-CGUgGGuuUUGGUC----GCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 146563 0.74 0.569296
Target:  5'- uGG-GCGCGgCCAGAGaccacCCAGCGCccGACCc -3'
miRNA:   3'- -CCaCGCGUgGGUUUU-----GGUCGCG--CUGG- -5'
5611 3' -55.1 NC_001806.1 + 144586 0.73 0.608909
Target:  5'- gGGUGcCGCGgcucuccgggcccCCCugcAGCCGGgGCGGCCa -3'
miRNA:   3'- -CCAC-GCGU-------------GGGuu-UUGGUCgCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 144213 0.69 0.840366
Target:  5'- --cGcCGaCACCgCAGAGCCGGCGCGcGCa -3'
miRNA:   3'- ccaC-GC-GUGG-GUUUUGGUCGCGC-UGg -5'
5611 3' -55.1 NC_001806.1 + 143637 0.72 0.661031
Target:  5'- --aGCGC-CCCGu--CCGGCGCG-CCg -3'
miRNA:   3'- ccaCGCGuGGGUuuuGGUCGCGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 143101 0.67 0.892379
Target:  5'- --cGUGaCACCCGAcGCUgggGGCGUGGCUg -3'
miRNA:   3'- ccaCGC-GUGGGUUuUGG---UCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 141975 0.71 0.731339
Target:  5'- cGGgggGCGCGgaCGAGgaaaacgucacACCAGCGgGACCa -3'
miRNA:   3'- -CCa--CGCGUggGUUU-----------UGGUCGCgCUGG- -5'
5611 3' -55.1 NC_001806.1 + 141396 0.74 0.569296
Target:  5'- uGUGUGC-CCCAGAgcauaaacACCAggccggggcggcGCGCGGCCa -3'
miRNA:   3'- cCACGCGuGGGUUU--------UGGU------------CGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 140114 0.71 0.741113
Target:  5'- gGGU-CGCcCCCAGAggagacGCCAgGCGCGGCa -3'
miRNA:   3'- -CCAcGCGuGGGUUU------UGGU-CGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 139785 0.67 0.897642
Target:  5'- uGGUGCauguuuuugaguacgGCACCCGcgcgaucaugguacgGGGCCgggAGCGCcagGACCg -3'
miRNA:   3'- -CCACG---------------CGUGGGU---------------UUUGG---UCGCG---CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.